In the plant Arabidopsis thaliana, At2g39660.1 is a gene model for the locus At2g39660.[1]
Also known as BIK1, this gene model is classified by TAIR as "BIK1 (BOTRYTIS-INDUCED KINASE1); kinase". It is located on chr2, region 16539021-16540679 FORWARD.
Physiological function[]
At2g39660.1/Function_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ ______________ ________________ (At1g78590) NADK3 (At1g78590) is a NAD(H) kinase with a strong preference for NADH over NAD+. NAD(H) kinases phosphorylate NAD(H) with ATP (other phosphoryl donors are not used preferentially) to form NADP(H). Phosphorylation of NAD(H) is the sole known means of generating NADP(H) de novo.
Tissue expression[]
At2g39660.1/Expression
Subcellular localization[]
At2g39660.1/Localization_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Biophysical properties[]
The gene model At2g39660.1 has 395 amino-acid residues and a molecular weight Mw = 44.109 kDa.
The protein is relatively basic; at the physiological pH 7.4, its net charge is 12.54, or 0.032 per residue._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Knockout phenotype[]
At2g39660.1/Knockout
Protein interactions[]
At2g39660.1/Interactions_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ This protein does not interact with calmodulin in the presence or absence of calcium or EGTA. NADK3 has been reported to be phosphorylated in vitro by AtMAPK4. NADK3 forms a homodimer.
Domain structure[]
The gene model At2g39660.1 has 1 recognized domains:
- Domain_0067_0349 Pkinase domain (PF00069, IPR000719) Description: Protein kinase;Molecular Function: protein kinase activity (GO:0004672), Molecular Function: ATP binding (GO:0005524), Biological Process: protein amino acid phosphorylation (GO:0006468)_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3 contains the conserved NAD(H) kinase domain, GSTAAMQSAGG for binding NAD and the upstream GGDGT ATP-binding domain.
Amino-acid sequence[]
>At2g39660.1
MGSCFSSRVK
ADIFHNGKSS
DLYGLSLSSR
KSSSTVAAAQ
KTEGEILSST
PVKSFTFNEL
KLATRNFRPD
SVIGEGGFGC
VFKGWLDEST
LTPTKPGTGL
VIAVKKLNQE
GFQGHREWLT
EINYLGQLSH
PNLVKLIGYC
LEDEHRLLVY
EFMQKGSLEN
HLFRRGAYFK
PLPWFLRVNV
ALDAAKGLAF
LHSDPVKVIY
RDIKASNILL
DADYNAKLSD
FGLARDGPMG
DLSYVSTRVM
GTYGYAAPEY
MSSGHLNARS
DVYSFGVLLL
EILSGKRALD
HNRPAKEENL
VDWARPYLTS
KRKVLLIVDN
RLDTQYLPEE
AVRMASVAVQ
CLSFEPKSRP
TMDQVVRALQ
QLQDNLGKPS
QTNPVKDTKK
LGFKTGTTKS
SEKRFTQKPF
GRHLV
________________Given the above incorrect annotations, this may, or may not, be the correct sequence for At1g57680.1 _________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE
WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ
FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP
CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF
MVREPISPGSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDAP
VLNVFLSHGISQIRSRY-
Multiple sequence alignment[]
A full-length multiple-sequence alignment (MSA) is available here. This MSA may be visualized by submitting it to a server such as ESPript.
Protein structure[]
A predicted structure for this protein is available here.
References[]
- ↑ This is a test reference.