&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&& Successfully read 2 file paths from WYRM_file_paths.txt generic_input /usr/local/www/html/proteins/workspace/ generic_output /usr/local/www/html/proteins/htdocs/results/ ====================================================== Sequence file type = 3 Sequence type = 3 Got here 1 Got here 2 Got here 3 Sequence 1 Got here 3 Got here 4 Got here 3 Got here 4 Got here 3 Sequence 2 Got here 3 Got here 4 Got here 3 Got here 4 Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g11775-d1bhta2.pir.txt ====================================================== Assigned types to 109 residues in Sequence 2-11775, 9 remain unknown Assigned types to 84 residues in Sequence d1bhta2, 34 remain unknown ====================================================== Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat ====================================================== Translated sequence file At2g11775-d1bhta2.pir.txt into sequence alignment. ====================================================== >1BHT.pdb Made from 2822 ATOM records in 1BHT.pdb RRNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTC KAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGKGR SYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNPRGEE GGPWCFTSNPEVRYEVCDIPQCSEVERNTIHEFKKSAKTTLIKIDPALKI KTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVK KEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHE HSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSEV ====================================================== Best alignment: 1BHT.pdb 58 ARKQCLWFPF 67 RKQ W PF 2-11775 97 VRKQSPWSPF 106 ====================================================== Highlighted IDENTICAL residue PHE 99 index1 65 path 113 %Seq 100.00 Highlighted 1 residues for visualization Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g11775-d1bhta2.pir.txt.1BHT.pdb.conservation.pml =============================================================================== The program /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g11775-d1bhta2.pir.txt PIR amino_acid 1BHT.pdb _ 100.0 BLOSUM62.dat completed successfully. @@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@
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At2g11775.1/PDB
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