&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
======================================================
Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
Got here 3
Sequence 1
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Sequence 2
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g05070-c1rwta_.pir.txt
======================================================
Assigned types to 265 residues in Sequence 2-05070, 0 remain unknown
Assigned types to 218 residues in Sequence c1rwta_, 47 remain unknown
======================================================
Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
======================================================
Translated sequence file At2g05070-c1rwta_.pir.txt into sequence alignment.
======================================================
>1RWT.pdb Made from 16619 ATOM records in 1RWT.pdb
SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRE
LEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL
GNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDP
LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL
ADPVNNNAWNFATNFVPGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG
WDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG
GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF
VQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGSPWYGPDRVKYLGP
FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGAL
GCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI
WACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELK
VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATN
FVPGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFA
KNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG
LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGG
SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
ADHLADPVNNNAWNFATNFVPGSPWYGPDRVKYLGPFSGESPSYLTGEFP
GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK
FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGY
RIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM
FGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGSPWYGPDRVK
YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM
LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQS
ILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF
AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWN
FATNFVPGKSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSAD
PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI
FSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP
LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
PLENLADHLADPVNNNAWNFATNFVPGSPWYGPDRVKYLGPFSGESPSYL
TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA
RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMG
AVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRL
AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGSPWYG
PDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH
CRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL
VHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAD
DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN
NNAWNFATNFVPGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAG
LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA
GSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGE
VVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV
TGKGPLENLADHLADPVNNNAWNFATNFVPG
======================================================
Best alignment:
1RWT.pdb 1088 VPGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAK 1137
P S WYGPDR KYLGPFS +PSYLTGE+PGDYGWDTAGLSADPETFAK
2-05070 44 TPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAK 93
1RWT.pdb 1138 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGL 1187
NRELEVIH RWAMLGALGC FPE+L++NGVKFGEAVWFKAGSQIFSEGGL
2-05070 94 NRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGL 143
1RWT.pdb 1188 DYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGS 1237
DYLGNP+L+HAQSILAIWA QV+LMG +EGYRI GGPLGE +DPLYPGG+
2-05070 144 DYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGA 193
1RWT.pdb 1238 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 1287
FDPL LA+DPEAF+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL
2-05070 194 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLF 243
1RWT.pdb 1288 DHLADPVNNNAWNFATNFVPGK 1309
DHLADPV NNAW++ATNFVPGK
2-05070 244 DHLADPVANNAWSYATNFVPGK 265
======================================================
Highlighted IDENTICAL residue VAL 229 index1 1088 path 44 %Seq 50.00
Highlighted IDENTICAL residue PRO 230 index1 1089 path 45 %Seq 50.00
Highlighted IDENTICAL residue GLY 231 index1 1090 path 46 %Seq 50.00
Highlighted IDENTICAL residue SER 14 index1 1091 path 47 %Seq 100.00
Highlighted IDENTICAL residue TRP 16 index1 1093 path 49 %Seq 100.00
Highlighted IDENTICAL residue TYR 17 index1 1094 path 50 %Seq 100.00
Highlighted IDENTICAL residue GLY 18 index1 1095 path 51 %Seq 100.00
Highlighted IDENTICAL residue PRO 19 index1 1096 path 52 %Seq 100.00
Highlighted IDENTICAL residue ASP 20 index1 1097 path 53 %Seq 100.00
Highlighted IDENTICAL residue ARG 21 index1 1098 path 54 %Seq 100.00
Highlighted IDENTICAL residue LYS 23 index1 1100 path 56 %Seq 100.00
Highlighted IDENTICAL residue TYR 24 index1 1101 path 57 %Seq 100.00
Highlighted IDENTICAL residue LEU 25 index1 1102 path 58 %Seq 100.00
Highlighted IDENTICAL residue GLY 26 index1 1103 path 59 %Seq 100.00
Highlighted IDENTICAL residue PRO 27 index1 1104 path 60 %Seq 100.00
Highlighted IDENTICAL residue PHE 28 index1 1105 path 61 %Seq 100.00
Highlighted IDENTICAL residue SER 29 index1 1106 path 62 %Seq 100.00
Highlighted IDENTICAL residue PRO 33 index1 1110 path 66 %Seq 100.00
Highlighted IDENTICAL residue SER 34 index1 1111 path 67 %Seq 100.00
Highlighted IDENTICAL residue TYR 35 index1 1112 path 68 %Seq 100.00
Highlighted IDENTICAL residue LEU 36 index1 1113 path 69 %Seq 100.00
Highlighted IDENTICAL residue THR 37 index1 1114 path 70 %Seq 100.00
Highlighted IDENTICAL residue GLY 38 index1 1115 path 71 %Seq 100.00
Highlighted IDENTICAL residue GLU 39 index1 1116 path 72 %Seq 100.00
Highlighted IDENTICAL residue PRO 41 index1 1118 path 74 %Seq 100.00
Highlighted IDENTICAL residue GLY 42 index1 1119 path 75 %Seq 100.00
Highlighted IDENTICAL residue ASP 43 index1 1120 path 76 %Seq 100.00
Highlighted IDENTICAL residue TYR 44 index1 1121 path 77 %Seq 100.00
Highlighted IDENTICAL residue GLY 45 index1 1122 path 78 %Seq 100.00
Highlighted IDENTICAL residue TRP 46 index1 1123 path 79 %Seq 100.00
Highlighted IDENTICAL residue ASP 47 index1 1124 path 80 %Seq 100.00
Highlighted IDENTICAL residue THR 48 index1 1125 path 81 %Seq 100.00
Highlighted IDENTICAL residue ALA 49 index1 1126 path 82 %Seq 100.00
Highlighted IDENTICAL residue GLY 50 index1 1127 path 83 %Seq 100.00
Highlighted IDENTICAL residue LEU 51 index1 1128 path 84 %Seq 100.00
Highlighted IDENTICAL residue SER 52 index1 1129 path 85 %Seq 100.00
Highlighted IDENTICAL residue ALA 53 index1 1130 path 86 %Seq 100.00
Highlighted IDENTICAL residue ASP 54 index1 1131 path 87 %Seq 100.00
Highlighted IDENTICAL residue PRO 55 index1 1132 path 88 %Seq 100.00
Highlighted IDENTICAL residue GLU 56 index1 1133 path 89 %Seq 100.00
Highlighted IDENTICAL residue THR 57 index1 1134 path 90 %Seq 100.00
Highlighted IDENTICAL residue PHE 58 index1 1135 path 91 %Seq 100.00
Highlighted IDENTICAL residue ALA 59 index1 1136 path 92 %Seq 100.00
Highlighted IDENTICAL residue LYS 60 index1 1137 path 93 %Seq 100.00
Highlighted IDENTICAL residue ASN 61 index1 1138 path 94 %Seq 100.00
Highlighted IDENTICAL residue ARG 62 index1 1139 path 95 %Seq 100.00
Highlighted IDENTICAL residue GLU 63 index1 1140 path 96 %Seq 100.00
Highlighted IDENTICAL residue LEU 64 index1 1141 path 97 %Seq 100.00
Highlighted IDENTICAL residue GLU 65 index1 1142 path 98 %Seq 100.00
Highlighted IDENTICAL residue VAL 66 index1 1143 path 99 %Seq 100.00
Highlighted IDENTICAL residue ILE 67 index1 1144 path 100 %Seq 100.00
Highlighted IDENTICAL residue HIS 68 index1 1145 path 101 %Seq 100.00
Highlighted IDENTICAL residue ARG 70 index1 1147 path 103 %Seq 100.00
Highlighted IDENTICAL residue TRP 71 index1 1148 path 104 %Seq 100.00
Highlighted IDENTICAL residue ALA 72 index1 1149 path 105 %Seq 100.00
Highlighted IDENTICAL residue MET 73 index1 1150 path 106 %Seq 100.00
Highlighted IDENTICAL residue LEU 74 index1 1151 path 107 %Seq 100.00
Highlighted IDENTICAL residue GLY 75 index1 1152 path 108 %Seq 100.00
Highlighted IDENTICAL residue ALA 76 index1 1153 path 109 %Seq 100.00
Highlighted IDENTICAL residue LEU 77 index1 1154 path 110 %Seq 100.00
Highlighted IDENTICAL residue GLY 78 index1 1155 path 111 %Seq 100.00
Highlighted IDENTICAL residue CYS 79 index1 1156 path 112 %Seq 100.00
Highlighted IDENTICAL residue PHE 81 index1 1158 path 114 %Seq 100.00
Highlighted IDENTICAL residue PRO 82 index1 1159 path 115 %Seq 100.00
Highlighted IDENTICAL residue GLU 83 index1 1160 path 116 %Seq 100.00
Highlighted IDENTICAL residue LEU 85 index1 1162 path 118 %Seq 100.00
Highlighted IDENTICAL residue ASN 88 index1 1165 path 121 %Seq 100.00
Highlighted IDENTICAL residue GLY 89 index1 1166 path 122 %Seq 100.00
Highlighted IDENTICAL residue VAL 90 index1 1167 path 123 %Seq 100.00
Highlighted IDENTICAL residue LYS 91 index1 1168 path 124 %Seq 100.00
Highlighted IDENTICAL residue PHE 92 index1 1169 path 125 %Seq 100.00
Highlighted IDENTICAL residue GLY 93 index1 1170 path 126 %Seq 100.00
Highlighted IDENTICAL residue GLU 94 index1 1171 path 127 %Seq 100.00
Highlighted IDENTICAL residue ALA 95 index1 1172 path 128 %Seq 100.00
Highlighted IDENTICAL residue VAL 96 index1 1173 path 129 %Seq 100.00
Highlighted IDENTICAL residue TRP 97 index1 1174 path 130 %Seq 100.00
Highlighted IDENTICAL residue PHE 98 index1 1175 path 131 %Seq 100.00
Highlighted IDENTICAL residue LYS 99 index1 1176 path 132 %Seq 100.00
Highlighted IDENTICAL residue ALA 100 index1 1177 path 133 %Seq 100.00
Highlighted IDENTICAL residue GLY 101 index1 1178 path 134 %Seq 100.00
Highlighted IDENTICAL residue SER 102 index1 1179 path 135 %Seq 100.00
Highlighted IDENTICAL residue GLN 103 index1 1180 path 136 %Seq 100.00
Highlighted IDENTICAL residue ILE 104 index1 1181 path 137 %Seq 100.00
Highlighted IDENTICAL residue PHE 105 index1 1182 path 138 %Seq 100.00
Highlighted IDENTICAL residue SER 106 index1 1183 path 139 %Seq 100.00
Highlighted IDENTICAL residue GLU 107 index1 1184 path 140 %Seq 100.00
Highlighted IDENTICAL residue GLY 108 index1 1185 path 141 %Seq 100.00
Highlighted IDENTICAL residue GLY 109 index1 1186 path 142 %Seq 100.00
Highlighted IDENTICAL residue LEU 110 index1 1187 path 143 %Seq 100.00
Highlighted IDENTICAL residue ASP 111 index1 1188 path 144 %Seq 100.00
Highlighted IDENTICAL residue TYR 112 index1 1189 path 145 %Seq 100.00
Highlighted IDENTICAL residue LEU 113 index1 1190 path 146 %Seq 100.00
Highlighted IDENTICAL residue GLY 114 index1 1191 path 147 %Seq 100.00
Highlighted IDENTICAL residue ASN 115 index1 1192 path 148 %Seq 100.00
Highlighted IDENTICAL residue PRO 116 index1 1193 path 149 %Seq 100.00
Highlighted IDENTICAL residue LEU 118 index1 1195 path 151 %Seq 100.00
Highlighted IDENTICAL residue HIS 120 index1 1197 path 153 %Seq 100.00
Highlighted IDENTICAL residue ALA 121 index1 1198 path 154 %Seq 100.00
Highlighted IDENTICAL residue GLN 122 index1 1199 path 155 %Seq 100.00
Highlighted IDENTICAL residue SER 123 index1 1200 path 156 %Seq 100.00
Highlighted IDENTICAL residue ILE 124 index1 1201 path 157 %Seq 100.00
Highlighted IDENTICAL residue LEU 125 index1 1202 path 158 %Seq 100.00
Highlighted IDENTICAL residue ALA 126 index1 1203 path 159 %Seq 100.00
Highlighted IDENTICAL residue ILE 127 index1 1204 path 160 %Seq 100.00
Highlighted IDENTICAL residue TRP 128 index1 1205 path 161 %Seq 100.00
Highlighted IDENTICAL residue ALA 129 index1 1206 path 162 %Seq 100.00
Highlighted IDENTICAL residue GLN 131 index1 1208 path 164 %Seq 100.00
Highlighted IDENTICAL residue VAL 132 index1 1209 path 165 %Seq 100.00
Highlighted IDENTICAL residue LEU 134 index1 1211 path 167 %Seq 100.00
Highlighted IDENTICAL residue MET 135 index1 1212 path 168 %Seq 100.00
Highlighted IDENTICAL residue GLY 136 index1 1213 path 169 %Seq 100.00
Highlighted IDENTICAL residue GLU 139 index1 1216 path 172 %Seq 100.00
Highlighted IDENTICAL residue GLY 140 index1 1217 path 173 %Seq 100.00
Highlighted IDENTICAL residue TYR 141 index1 1218 path 174 %Seq 100.00
Highlighted IDENTICAL residue ARG 142 index1 1219 path 175 %Seq 100.00
Highlighted IDENTICAL residue ILE 143 index1 1220 path 176 %Seq 100.00
Highlighted IDENTICAL residue GLY 145 index1 1222 path 178 %Seq 100.00
Highlighted IDENTICAL residue GLY 146 index1 1223 path 179 %Seq 100.00
Highlighted IDENTICAL residue PRO 147 index1 1224 path 180 %Seq 100.00
Highlighted IDENTICAL residue LEU 148 index1 1225 path 181 %Seq 100.00
Highlighted IDENTICAL residue GLY 149 index1 1226 path 182 %Seq 100.00
Highlighted IDENTICAL residue GLU 150 index1 1227 path 183 %Seq 100.00
Highlighted IDENTICAL residue ASP 153 index1 1230 path 186 %Seq 100.00
Highlighted IDENTICAL residue PRO 154 index1 1231 path 187 %Seq 100.00
Highlighted IDENTICAL residue LEU 155 index1 1232 path 188 %Seq 100.00
Highlighted IDENTICAL residue TYR 156 index1 1233 path 189 %Seq 100.00
Highlighted IDENTICAL residue PRO 157 index1 1234 path 190 %Seq 100.00
Highlighted IDENTICAL residue GLY 158 index1 1235 path 191 %Seq 100.00
Highlighted IDENTICAL residue GLY 159 index1 1236 path 192 %Seq 100.00
Highlighted IDENTICAL residue PHE 161 index1 1238 path 194 %Seq 100.00
Highlighted IDENTICAL residue ASP 162 index1 1239 path 195 %Seq 100.00
Highlighted IDENTICAL residue PRO 163 index1 1240 path 196 %Seq 100.00
Highlighted IDENTICAL residue LEU 164 index1 1241 path 197 %Seq 100.00
Highlighted IDENTICAL residue LEU 166 index1 1243 path 199 %Seq 100.00
Highlighted IDENTICAL residue ALA 167 index1 1244 path 200 %Seq 100.00
Highlighted IDENTICAL residue ASP 169 index1 1246 path 202 %Seq 100.00
Highlighted IDENTICAL residue PRO 170 index1 1247 path 203 %Seq 100.00
Highlighted IDENTICAL residue GLU 171 index1 1248 path 204 %Seq 100.00
Highlighted IDENTICAL residue ALA 172 index1 1249 path 205 %Seq 100.00
Highlighted IDENTICAL residue PHE 173 index1 1250 path 206 %Seq 100.00
Highlighted IDENTICAL residue GLU 175 index1 1252 path 208 %Seq 100.00
Highlighted IDENTICAL residue LEU 176 index1 1253 path 209 %Seq 100.00
Highlighted IDENTICAL residue LYS 177 index1 1254 path 210 %Seq 100.00
Highlighted IDENTICAL residue VAL 178 index1 1255 path 211 %Seq 100.00
Highlighted IDENTICAL residue LYS 179 index1 1256 path 212 %Seq 100.00
Highlighted IDENTICAL residue GLU 180 index1 1257 path 213 %Seq 100.00
Highlighted IDENTICAL residue LYS 182 index1 1259 path 215 %Seq 100.00
Highlighted IDENTICAL residue ASN 183 index1 1260 path 216 %Seq 100.00
Highlighted IDENTICAL residue GLY 184 index1 1261 path 217 %Seq 100.00
Highlighted IDENTICAL residue ARG 185 index1 1262 path 218 %Seq 100.00
Highlighted IDENTICAL residue LEU 186 index1 1263 path 219 %Seq 100.00
Highlighted IDENTICAL residue ALA 187 index1 1264 path 220 %Seq 100.00
Highlighted IDENTICAL residue MET 188 index1 1265 path 221 %Seq 100.00
Highlighted IDENTICAL residue PHE 189 index1 1266 path 222 %Seq 100.00
Highlighted IDENTICAL residue SER 190 index1 1267 path 223 %Seq 100.00
Highlighted IDENTICAL residue MET 191 index1 1268 path 224 %Seq 100.00
Highlighted IDENTICAL residue PHE 192 index1 1269 path 225 %Seq 100.00
Highlighted IDENTICAL residue GLY 193 index1 1270 path 226 %Seq 100.00
Highlighted IDENTICAL residue PHE 194 index1 1271 path 227 %Seq 100.00
Highlighted IDENTICAL residue PHE 195 index1 1272 path 228 %Seq 100.00
Highlighted IDENTICAL residue VAL 196 index1 1273 path 229 %Seq 100.00
Highlighted IDENTICAL residue GLN 197 index1 1274 path 230 %Seq 100.00
Highlighted IDENTICAL residue ALA 198 index1 1275 path 231 %Seq 100.00
Highlighted IDENTICAL residue ILE 199 index1 1276 path 232 %Seq 100.00
Highlighted IDENTICAL residue VAL 200 index1 1277 path 233 %Seq 100.00
Highlighted IDENTICAL residue THR 201 index1 1278 path 234 %Seq 100.00
Highlighted IDENTICAL residue GLY 202 index1 1279 path 235 %Seq 100.00
Highlighted IDENTICAL residue LYS 203 index1 1280 path 236 %Seq 100.00
Highlighted IDENTICAL residue GLY 204 index1 1281 path 237 %Seq 100.00
Highlighted IDENTICAL residue PRO 205 index1 1282 path 238 %Seq 100.00
Highlighted IDENTICAL residue GLU 207 index1 1284 path 240 %Seq 100.00
Highlighted IDENTICAL residue ASN 208 index1 1285 path 241 %Seq 100.00
Highlighted IDENTICAL residue LEU 209 index1 1286 path 242 %Seq 100.00
Highlighted IDENTICAL residue ASP 211 index1 1288 path 244 %Seq 100.00
Highlighted IDENTICAL residue HIS 212 index1 1289 path 245 %Seq 100.00
Highlighted IDENTICAL residue LEU 213 index1 1290 path 246 %Seq 100.00
Highlighted IDENTICAL residue ALA 214 index1 1291 path 247 %Seq 100.00
Highlighted IDENTICAL residue ASP 215 index1 1292 path 248 %Seq 100.00
Highlighted IDENTICAL residue PRO 216 index1 1293 path 249 %Seq 100.00
Highlighted IDENTICAL residue VAL 217 index1 1294 path 250 %Seq 100.00
Highlighted IDENTICAL residue ASN 219 index1 1296 path 252 %Seq 100.00
Highlighted IDENTICAL residue ASN 220 index1 1297 path 253 %Seq 100.00
Highlighted IDENTICAL residue ALA 221 index1 1298 path 254 %Seq 100.00
Highlighted IDENTICAL residue TRP 222 index1 1299 path 255 %Seq 100.00
Highlighted IDENTICAL residue ALA 225 index1 1302 path 258 %Seq 100.00
Highlighted IDENTICAL residue THR 226 index1 1303 path 259 %Seq 100.00
Highlighted IDENTICAL residue ASN 227 index1 1304 path 260 %Seq 100.00
Highlighted IDENTICAL residue PHE 228 index1 1305 path 261 %Seq 100.00
Highlighted IDENTICAL residue VAL 229 index1 1306 path 262 %Seq 100.00
Highlighted IDENTICAL residue PRO 230 index1 1307 path 263 %Seq 100.00
Highlighted IDENTICAL residue GLY 231 index1 1308 path 264 %Seq 100.00
Highlighted IDENTICAL residue LYS 232 index1 1309 path 265 %Seq 50.00
Highlighted 192 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g05070-c1rwta_.pir.txt.1RWT.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g05070-c1rwta_.pir.txt PIR amino_acid 1RWT.pdb _ 100.0 BLOSUM62.dat
completed successfully.
@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@
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