&&&&&&&&&&&&&&&&&&&& BEGIN /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&
Successfully read 2 file paths from WYRM_file_paths.txt
generic_input /usr/local/www/html/proteins/workspace/
generic_output /usr/local/www/html/proteins/htdocs/results/
======================================================
Sequence file type = 3
Sequence type = 3
Got here 1
Got here 2
Got here 3
Sequence 1
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Sequence 2
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g04270-3-2bx2L.pir.txt
======================================================
Assigned types to 619 residues in Sequence 2-4270-3, 8 remain unknown
Assigned types to 463 residues in Sequence 2bx2L, 164 remain unknown
======================================================
Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat
======================================================
Translated sequence file At2g04270-3-2bx2L.pir.txt into sequence alignment.
======================================================
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid
>2BX2.pdb Made from 4076 ATOM records in 2BX2.pdb
AHIEGRHMKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYK
GKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPRPNIKDVLREGQEV
IVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIELKEALA
SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL
IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI
KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINS
ARGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGT
GTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVN
AIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAM
XXXXXXXXXXXXXX
======================================================
Best alignment:
2BX2.pdb 94 LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG---GIS 140
+R+G ++IVQ+ KE G KG LT + L + VL+ R G IS
2-4270-3 251 VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKIS 300
2BX2.pdb 140 --RRIELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW--- 185
R LK +L+ P+G GL VRT G S E LQ DL L W
2-4270-3 301 GVERTRLKVIAKTLQ-PQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNI 349
2BX2.pdb 185 -----EAIKKAAE--SRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 228
A A E P L+H+ + +DY + ++++D+P
2-4270-3 350 TDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 399
2BX2.pdb 229 KVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR 278
+ ++ + PD ++++L+ IPLF Y+IE +IE + V
2-4270-3 400 RTYHEVTHYLQDMA-PDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVP 448
2BX2.pdb 279 LPSGGSIVIDSTEALTAIDINSA-----RGDIEETA-FNTNLEAADEIAR 322
L +GGS+VI+ TEAL +ID+N +G+ +E A NL AA +IAR
2-4270-3 449 LSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 498
2BX2.pdb 323 QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRF 372
++RLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR
2-4270-3 499 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRH 548
2BX2.pdb 373 GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 408
GL+E++R+R+ PS+ C C TG V E+
2-4270-3 549 GLMEITRKRVRPSVTFMISEPCSCCHATGRVEALET 584
======================================================
Highlighted IDENTICAL residue ARG 95 index1 95 path 252 %Seq 100.00
Highlighted IDENTICAL residue GLY 97 index1 97 path 254 %Seq 100.00
Highlighted IDENTICAL residue ILE 101 index1 101 path 258 %Seq 100.00
Highlighted IDENTICAL residue VAL 102 index1 102 path 259 %Seq 100.00
Highlighted IDENTICAL residue GLN 103 index1 103 path 260 %Seq 100.00
Highlighted IDENTICAL residue LYS 106 index1 106 path 263 %Seq 100.00
Highlighted IDENTICAL residue GLU 107 index1 107 path 264 %Seq 100.00
Highlighted IDENTICAL residue GLY 110 index1 110 path 267 %Seq 100.00
Highlighted IDENTICAL residue LYS 112 index1 112 path 269 %Seq 100.00
Highlighted IDENTICAL residue GLY 113 index1 113 path 270 %Seq 100.00
Highlighted IDENTICAL residue LEU 116 index1 116 path 273 %Seq 100.00
Highlighted IDENTICAL residue THR 117 index1 117 path 274 %Seq 100.00
Highlighted IDENTICAL residue LEU 122 index1 122 path 279 %Seq 100.00
Highlighted IDENTICAL residue VAL 128 index1 128 path 285 %Seq 100.00
Highlighted IDENTICAL residue LEU 129 index1 129 path 286 %Seq 100.00
Highlighted IDENTICAL residue ARG 135 index1 135 path 292 %Seq 100.00
Highlighted IDENTICAL residue GLY 137 index1 137 path 295 %Seq 100.00
Highlighted IDENTICAL residue ILE 139 index1 139 path 300 %Seq 100.00
Highlighted IDENTICAL residue ARG 142 index1 142 path 305 %Seq 100.00
Highlighted IDENTICAL residue ILE 143 index1 143 path 306 %Seq 100.00
Highlighted IDENTICAL residue LEU 151 index1 145 path 308 %Seq 100.00
Highlighted IDENTICAL residue LYS 152 index1 146 path 309 %Seq 100.00
Highlighted IDENTICAL residue LEU 158 index1 152 path 315 %Seq 100.00
Highlighted IDENTICAL residue PRO 161 index1 155 path 318 %Seq 100.00
Highlighted IDENTICAL residue GLY 163 index1 157 path 320 %Seq 100.00
Highlighted IDENTICAL residue GLY 165 index1 159 path 322 %Seq 100.00
Highlighted IDENTICAL residue LEU 166 index1 160 path 323 %Seq 100.00
Highlighted IDENTICAL residue VAL 168 index1 162 path 325 %Seq 100.00
Highlighted IDENTICAL residue ARG 169 index1 163 path 326 %Seq 100.00
Highlighted IDENTICAL residue THR 170 index1 164 path 327 %Seq 100.00
Highlighted IDENTICAL residue GLY 174 index1 168 path 331 %Seq 100.00
Highlighted IDENTICAL residue SER 176 index1 170 path 333 %Seq 100.00
Highlighted IDENTICAL residue GLU 178 index1 172 path 335 %Seq 100.00
Highlighted IDENTICAL residue LEU 180 index1 174 path 337 %Seq 100.00
Highlighted IDENTICAL residue GLN 181 index1 175 path 338 %Seq 100.00
Highlighted IDENTICAL residue ASP 183 index1 177 path 340 %Seq 100.00
Highlighted IDENTICAL residue LEU 184 index1 178 path 341 %Seq 100.00
Highlighted IDENTICAL residue LEU 188 index1 182 path 345 %Seq 100.00
Highlighted IDENTICAL residue TRP 191 index1 185 path 348 %Seq 100.00
Highlighted IDENTICAL residue GLU 192 index1 186 path 357 %Seq 100.00
Highlighted IDENTICAL residue ILE 194 index1 188 path 359 %Seq 50.00
Highlighted IDENTICAL residue LYS 195 index1 189 path 360 %Seq 50.00
Highlighted IDENTICAL residue LYS 196 index1 190 path 361 %Seq 50.00
Highlighted IDENTICAL residue ALA 197 index1 191 path 362 %Seq 50.00
Highlighted IDENTICAL residue ALA 198 index1 192 path 363 %Seq 50.00
Highlighted IDENTICAL residue GLU 199 index1 193 path 364 %Seq 50.00
Highlighted IDENTICAL residue SER 200 index1 194 path 367 %Seq 50.00
Highlighted IDENTICAL residue ARG 201 index1 195 path 368 %Seq 50.00
Highlighted IDENTICAL residue PRO 204 index1 198 path 371 %Seq 100.00
Highlighted IDENTICAL residue LEU 206 index1 200 path 373 %Seq 100.00
Highlighted IDENTICAL residue HIS 208 index1 202 path 375 %Seq 100.00
Highlighted IDENTICAL residue ASP 220 index1 214 path 387 %Seq 100.00
Highlighted IDENTICAL residue TYR 221 index1 215 path 388 %Seq 100.00
Highlighted IDENTICAL residue ASP 232 index1 226 path 399 %Seq 100.00
Highlighted IDENTICAL residue PRO 234 index1 228 path 401 %Seq 100.00
Highlighted IDENTICAL residue PRO 250 index1 244 path 417 %Seq 100.00
Highlighted IDENTICAL residue ASP 251 index1 245 path 418 %Seq 100.00
Highlighted IDENTICAL residue LEU 258 index1 252 path 425 %Seq 100.00
Highlighted IDENTICAL residue ILE 263 index1 257 path 430 %Seq 100.00
Highlighted IDENTICAL residue PRO 264 index1 258 path 431 %Seq 100.00
Highlighted IDENTICAL residue LEU 265 index1 259 path 432 %Seq 100.00
Highlighted IDENTICAL residue PHE 266 index1 260 path 433 %Seq 100.00
Highlighted IDENTICAL residue TYR 269 index1 263 path 436 %Seq 100.00
Highlighted IDENTICAL residue ILE 271 index1 265 path 438 %Seq 100.00
Highlighted IDENTICAL residue GLU 272 index1 266 path 439 %Seq 100.00
Highlighted IDENTICAL residue ILE 275 index1 269 path 442 %Seq 100.00
Highlighted IDENTICAL residue GLU 276 index1 270 path 443 %Seq 100.00
Highlighted IDENTICAL residue VAL 283 index1 277 path 450 %Seq 100.00
Highlighted IDENTICAL residue LEU 285 index1 279 path 452 %Seq 100.00
Highlighted IDENTICAL residue GLY 288 index1 282 path 455 %Seq 100.00
Highlighted IDENTICAL residue GLY 289 index1 283 path 456 %Seq 100.00
Highlighted IDENTICAL residue SER 290 index1 284 path 457 %Seq 100.00
Highlighted IDENTICAL residue VAL 292 index1 286 path 459 %Seq 100.00
Highlighted IDENTICAL residue ILE 293 index1 287 path 460 %Seq 100.00
Highlighted IDENTICAL residue THR 296 index1 290 path 463 %Seq 100.00
Highlighted IDENTICAL residue GLU 297 index1 291 path 464 %Seq 100.00
Highlighted IDENTICAL residue ALA 298 index1 292 path 465 %Seq 100.00
Highlighted IDENTICAL residue LEU 299 index1 293 path 466 %Seq 100.00
Highlighted IDENTICAL residue ILE 302 index1 296 path 469 %Seq 100.00
Highlighted IDENTICAL residue ASP 303 index1 297 path 470 %Seq 100.00
Highlighted IDENTICAL residue ASN 305 index1 299 path 472 %Seq 100.00
Highlighted IDENTICAL residue GLY 313 index1 303 path 481 %Seq 100.00
Highlighted IDENTICAL residue GLU 317 index1 307 path 485 %Seq 100.00
Highlighted IDENTICAL residue ASN 323 index1 313 path 492 %Seq 100.00
Highlighted IDENTICAL residue LEU 324 index1 314 path 493 %Seq 100.00
Highlighted IDENTICAL residue ALA 326 index1 316 path 495 %Seq 100.00
Highlighted IDENTICAL residue ALA 327 index1 317 path 496 %Seq 100.00
Highlighted IDENTICAL residue ILE 330 index1 320 path 499 %Seq 100.00
Highlighted IDENTICAL residue ALA 331 index1 321 path 500 %Seq 100.00
Highlighted IDENTICAL residue ARG 332 index1 322 path 501 %Seq 100.00
Highlighted IDENTICAL residue ARG 335 index1 325 path 504 %Seq 100.00
Highlighted IDENTICAL residue LEU 336 index1 326 path 505 %Seq 100.00
Highlighted IDENTICAL residue ARG 337 index1 327 path 506 %Seq 100.00
Highlighted IDENTICAL residue ASP 338 index1 328 path 507 %Seq 100.00
Highlighted IDENTICAL residue GLY 340 index1 330 path 509 %Seq 100.00
Highlighted IDENTICAL residue GLY 341 index1 331 path 510 %Seq 100.00
Highlighted IDENTICAL residue ILE 343 index1 333 path 512 %Seq 100.00
Highlighted IDENTICAL residue VAL 344 index1 334 path 513 %Seq 100.00
Highlighted IDENTICAL residue ASP 346 index1 336 path 515 %Seq 100.00
Highlighted IDENTICAL residue PHE 347 index1 337 path 516 %Seq 100.00
Highlighted IDENTICAL residue ILE 348 index1 338 path 517 %Seq 100.00
Highlighted IDENTICAL residue ASP 349 index1 339 path 518 %Seq 100.00
Highlighted IDENTICAL residue MET 350 index1 340 path 519 %Seq 100.00
Highlighted IDENTICAL residue ARG 357 index1 347 path 526 %Seq 100.00
Highlighted IDENTICAL residue VAL 359 index1 349 path 528 %Seq 100.00
Highlighted IDENTICAL residue ALA 366 index1 356 path 535 %Seq 100.00
Highlighted IDENTICAL residue VAL 367 index1 357 path 536 %Seq 100.00
Highlighted IDENTICAL residue ASP 370 index1 360 path 539 %Seq 100.00
Highlighted IDENTICAL residue ARG 371 index1 361 path 540 %Seq 100.00
Highlighted IDENTICAL residue SER 377 index1 367 path 546 %Seq 100.00
Highlighted IDENTICAL residue SER 380 index1 370 path 549 %Seq 100.00
Highlighted IDENTICAL residue ARG 381 index1 371 path 550 %Seq 100.00
Highlighted IDENTICAL residue GLY 383 index1 373 path 552 %Seq 100.00
Highlighted IDENTICAL residue LEU 384 index1 374 path 553 %Seq 100.00
Highlighted IDENTICAL residue GLU 386 index1 376 path 555 %Seq 100.00
Highlighted IDENTICAL residue ARG 389 index1 379 path 558 %Seq 100.00
Highlighted IDENTICAL residue ARG 391 index1 381 path 560 %Seq 100.00
Highlighted IDENTICAL residue PRO 394 index1 384 path 563 %Seq 100.00
Highlighted IDENTICAL residue SER 395 index1 385 path 564 %Seq 100.00
Highlighted IDENTICAL residue CYS 404 index1 394 path 573 %Seq 100.00
Highlighted IDENTICAL residue CYS 407 index1 397 path 576 %Seq 100.00
Highlighted IDENTICAL residue THR 410 index1 400 path 579 %Seq 100.00
Highlighted IDENTICAL residue GLY 411 index1 401 path 580 %Seq 100.00
Highlighted IDENTICAL residue VAL 413 index1 403 path 582 %Seq 100.00
Highlighted IDENTICAL residue GLU 417 index1 407 path 586 %Seq 100.00
Highlighted 125 residues for visualization
Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g04270-3-2bx2L.pir.txt.2BX2.pdb.conservation.pml
===============================================================================
The program
/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g04270-3-2bx2L.pir.txt PIR amino_acid 2BX2.pdb _ 100.0 BLOSUM62.dat
completed successfully.
@@@@@@@@@@@@@@@@@@@@ END /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@
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At2g04270.3/PDB
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