FANDOM


&&&&&&&&&&&&&&&&&&&& BEGIN  /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                         /usr/local/www/html/proteins/workspace/
generic_output                                        /usr/local/www/html/proteins/htdocs/results/

======================================================

Sequence file type = 3

Sequence type = 3

Got here 1
Got here 2
Got here 3
Sequence 1
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Sequence 2
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g04270-3-2bx2L.pir.txt

======================================================

Assigned types to 619 residues in Sequence 2-4270-3, 8 remain unknown
Assigned types to 463 residues in Sequence 2bx2L, 164 remain unknown

======================================================

Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

======================================================

Translated sequence file At2g04270-3-2bx2L.pir.txt into sequence alignment.

======================================================

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

>2BX2.pdb  Made from 4076 ATOM records in 2BX2.pdb
AHIEGRHMKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYK
GKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPRPNIKDVLREGQEV
IVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIELKEALA
SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL
IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI
KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINS
ARGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGT
GTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVN
AIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAM
XXXXXXXXXXXXXX

======================================================

Best alignment:
2BX2.pdb    94  LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG---GIS   140
                +R+G ++IVQ+ KE  G KG  LT +  L   + VL+    R G    IS
2-4270-3   251  VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKIS   300

2BX2.pdb   140  --RRIELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW---   185
                   R  LK    +L+ P+G GL VRT   G S E LQ DL   L  W   
2-4270-3   301  GVERTRLKVIAKTLQ-PQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNI   349

2BX2.pdb   185  -----EAIKKAAE--SRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP   228
                      A   A E      P L+H+     +   +DY    + ++++D+P
2-4270-3   350  TDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP   399

2BX2.pdb   229  KVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR   278
                +       ++  +  PD  ++++L+   IPLF  Y+IE +IE    + V 
2-4270-3   400  RTYHEVTHYLQDMA-PDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVP   448

2BX2.pdb   279  LPSGGSIVIDSTEALTAIDINSA-----RGDIEETA-FNTNLEAADEIAR   322
                L +GGS+VI+ TEAL +ID+N       +G+ +E A    NL AA +IAR
2-4270-3   449  LSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR   498

2BX2.pdb   323  QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRF   372
                ++RLRD+GG+IV+DFIDM    ++R V   +++AV +DR+ +++S +SR 
2-4270-3   499  EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRH   548

2BX2.pdb   373  GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES   408
                GL+E++R+R+ PS+       C  C  TG V   E+
2-4270-3   549  GLMEITRKRVRPSVTFMISEPCSCCHATGRVEALET   584

======================================================

Highlighted IDENTICAL residue ARG   95  index1   95  path  252  %Seq 100.00
Highlighted IDENTICAL residue GLY   97  index1   97  path  254  %Seq 100.00
Highlighted IDENTICAL residue ILE  101  index1  101  path  258  %Seq 100.00
Highlighted IDENTICAL residue VAL  102  index1  102  path  259  %Seq 100.00
Highlighted IDENTICAL residue GLN  103  index1  103  path  260  %Seq 100.00
Highlighted IDENTICAL residue LYS  106  index1  106  path  263  %Seq 100.00
Highlighted IDENTICAL residue GLU  107  index1  107  path  264  %Seq 100.00
Highlighted IDENTICAL residue GLY  110  index1  110  path  267  %Seq 100.00
Highlighted IDENTICAL residue LYS  112  index1  112  path  269  %Seq 100.00
Highlighted IDENTICAL residue GLY  113  index1  113  path  270  %Seq 100.00
Highlighted IDENTICAL residue LEU  116  index1  116  path  273  %Seq 100.00
Highlighted IDENTICAL residue THR  117  index1  117  path  274  %Seq 100.00
Highlighted IDENTICAL residue LEU  122  index1  122  path  279  %Seq 100.00
Highlighted IDENTICAL residue VAL  128  index1  128  path  285  %Seq 100.00
Highlighted IDENTICAL residue LEU  129  index1  129  path  286  %Seq 100.00
Highlighted IDENTICAL residue ARG  135  index1  135  path  292  %Seq 100.00
Highlighted IDENTICAL residue GLY  137  index1  137  path  295  %Seq 100.00
Highlighted IDENTICAL residue ILE  139  index1  139  path  300  %Seq 100.00
Highlighted IDENTICAL residue ARG  142  index1  142  path  305  %Seq 100.00
Highlighted IDENTICAL residue ILE  143  index1  143  path  306  %Seq 100.00
Highlighted IDENTICAL residue LEU  151  index1  145  path  308  %Seq 100.00
Highlighted IDENTICAL residue LYS  152  index1  146  path  309  %Seq 100.00
Highlighted IDENTICAL residue LEU  158  index1  152  path  315  %Seq 100.00
Highlighted IDENTICAL residue PRO  161  index1  155  path  318  %Seq 100.00
Highlighted IDENTICAL residue GLY  163  index1  157  path  320  %Seq 100.00
Highlighted IDENTICAL residue GLY  165  index1  159  path  322  %Seq 100.00
Highlighted IDENTICAL residue LEU  166  index1  160  path  323  %Seq 100.00
Highlighted IDENTICAL residue VAL  168  index1  162  path  325  %Seq 100.00
Highlighted IDENTICAL residue ARG  169  index1  163  path  326  %Seq 100.00
Highlighted IDENTICAL residue THR  170  index1  164  path  327  %Seq 100.00
Highlighted IDENTICAL residue GLY  174  index1  168  path  331  %Seq 100.00
Highlighted IDENTICAL residue SER  176  index1  170  path  333  %Seq 100.00
Highlighted IDENTICAL residue GLU  178  index1  172  path  335  %Seq 100.00
Highlighted IDENTICAL residue LEU  180  index1  174  path  337  %Seq 100.00
Highlighted IDENTICAL residue GLN  181  index1  175  path  338  %Seq 100.00
Highlighted IDENTICAL residue ASP  183  index1  177  path  340  %Seq 100.00
Highlighted IDENTICAL residue LEU  184  index1  178  path  341  %Seq 100.00
Highlighted IDENTICAL residue LEU  188  index1  182  path  345  %Seq 100.00
Highlighted IDENTICAL residue TRP  191  index1  185  path  348  %Seq 100.00
Highlighted IDENTICAL residue GLU  192  index1  186  path  357  %Seq 100.00
Highlighted IDENTICAL residue ILE  194  index1  188  path  359  %Seq  50.00
Highlighted IDENTICAL residue LYS  195  index1  189  path  360  %Seq  50.00
Highlighted IDENTICAL residue LYS  196  index1  190  path  361  %Seq  50.00
Highlighted IDENTICAL residue ALA  197  index1  191  path  362  %Seq  50.00
Highlighted IDENTICAL residue ALA  198  index1  192  path  363  %Seq  50.00
Highlighted IDENTICAL residue GLU  199  index1  193  path  364  %Seq  50.00
Highlighted IDENTICAL residue SER  200  index1  194  path  367  %Seq  50.00
Highlighted IDENTICAL residue ARG  201  index1  195  path  368  %Seq  50.00
Highlighted IDENTICAL residue PRO  204  index1  198  path  371  %Seq 100.00
Highlighted IDENTICAL residue LEU  206  index1  200  path  373  %Seq 100.00
Highlighted IDENTICAL residue HIS  208  index1  202  path  375  %Seq 100.00
Highlighted IDENTICAL residue ASP  220  index1  214  path  387  %Seq 100.00
Highlighted IDENTICAL residue TYR  221  index1  215  path  388  %Seq 100.00
Highlighted IDENTICAL residue ASP  232  index1  226  path  399  %Seq 100.00
Highlighted IDENTICAL residue PRO  234  index1  228  path  401  %Seq 100.00
Highlighted IDENTICAL residue PRO  250  index1  244  path  417  %Seq 100.00
Highlighted IDENTICAL residue ASP  251  index1  245  path  418  %Seq 100.00
Highlighted IDENTICAL residue LEU  258  index1  252  path  425  %Seq 100.00
Highlighted IDENTICAL residue ILE  263  index1  257  path  430  %Seq 100.00
Highlighted IDENTICAL residue PRO  264  index1  258  path  431  %Seq 100.00
Highlighted IDENTICAL residue LEU  265  index1  259  path  432  %Seq 100.00
Highlighted IDENTICAL residue PHE  266  index1  260  path  433  %Seq 100.00
Highlighted IDENTICAL residue TYR  269  index1  263  path  436  %Seq 100.00
Highlighted IDENTICAL residue ILE  271  index1  265  path  438  %Seq 100.00
Highlighted IDENTICAL residue GLU  272  index1  266  path  439  %Seq 100.00
Highlighted IDENTICAL residue ILE  275  index1  269  path  442  %Seq 100.00
Highlighted IDENTICAL residue GLU  276  index1  270  path  443  %Seq 100.00
Highlighted IDENTICAL residue VAL  283  index1  277  path  450  %Seq 100.00
Highlighted IDENTICAL residue LEU  285  index1  279  path  452  %Seq 100.00
Highlighted IDENTICAL residue GLY  288  index1  282  path  455  %Seq 100.00
Highlighted IDENTICAL residue GLY  289  index1  283  path  456  %Seq 100.00
Highlighted IDENTICAL residue SER  290  index1  284  path  457  %Seq 100.00
Highlighted IDENTICAL residue VAL  292  index1  286  path  459  %Seq 100.00
Highlighted IDENTICAL residue ILE  293  index1  287  path  460  %Seq 100.00
Highlighted IDENTICAL residue THR  296  index1  290  path  463  %Seq 100.00
Highlighted IDENTICAL residue GLU  297  index1  291  path  464  %Seq 100.00
Highlighted IDENTICAL residue ALA  298  index1  292  path  465  %Seq 100.00
Highlighted IDENTICAL residue LEU  299  index1  293  path  466  %Seq 100.00
Highlighted IDENTICAL residue ILE  302  index1  296  path  469  %Seq 100.00
Highlighted IDENTICAL residue ASP  303  index1  297  path  470  %Seq 100.00
Highlighted IDENTICAL residue ASN  305  index1  299  path  472  %Seq 100.00
Highlighted IDENTICAL residue GLY  313  index1  303  path  481  %Seq 100.00
Highlighted IDENTICAL residue GLU  317  index1  307  path  485  %Seq 100.00
Highlighted IDENTICAL residue ASN  323  index1  313  path  492  %Seq 100.00
Highlighted IDENTICAL residue LEU  324  index1  314  path  493  %Seq 100.00
Highlighted IDENTICAL residue ALA  326  index1  316  path  495  %Seq 100.00
Highlighted IDENTICAL residue ALA  327  index1  317  path  496  %Seq 100.00
Highlighted IDENTICAL residue ILE  330  index1  320  path  499  %Seq 100.00
Highlighted IDENTICAL residue ALA  331  index1  321  path  500  %Seq 100.00
Highlighted IDENTICAL residue ARG  332  index1  322  path  501  %Seq 100.00
Highlighted IDENTICAL residue ARG  335  index1  325  path  504  %Seq 100.00
Highlighted IDENTICAL residue LEU  336  index1  326  path  505  %Seq 100.00
Highlighted IDENTICAL residue ARG  337  index1  327  path  506  %Seq 100.00
Highlighted IDENTICAL residue ASP  338  index1  328  path  507  %Seq 100.00
Highlighted IDENTICAL residue GLY  340  index1  330  path  509  %Seq 100.00
Highlighted IDENTICAL residue GLY  341  index1  331  path  510  %Seq 100.00
Highlighted IDENTICAL residue ILE  343  index1  333  path  512  %Seq 100.00
Highlighted IDENTICAL residue VAL  344  index1  334  path  513  %Seq 100.00
Highlighted IDENTICAL residue ASP  346  index1  336  path  515  %Seq 100.00
Highlighted IDENTICAL residue PHE  347  index1  337  path  516  %Seq 100.00
Highlighted IDENTICAL residue ILE  348  index1  338  path  517  %Seq 100.00
Highlighted IDENTICAL residue ASP  349  index1  339  path  518  %Seq 100.00
Highlighted IDENTICAL residue MET  350  index1  340  path  519  %Seq 100.00
Highlighted IDENTICAL residue ARG  357  index1  347  path  526  %Seq 100.00
Highlighted IDENTICAL residue VAL  359  index1  349  path  528  %Seq 100.00
Highlighted IDENTICAL residue ALA  366  index1  356  path  535  %Seq 100.00
Highlighted IDENTICAL residue VAL  367  index1  357  path  536  %Seq 100.00
Highlighted IDENTICAL residue ASP  370  index1  360  path  539  %Seq 100.00
Highlighted IDENTICAL residue ARG  371  index1  361  path  540  %Seq 100.00
Highlighted IDENTICAL residue SER  377  index1  367  path  546  %Seq 100.00
Highlighted IDENTICAL residue SER  380  index1  370  path  549  %Seq 100.00
Highlighted IDENTICAL residue ARG  381  index1  371  path  550  %Seq 100.00
Highlighted IDENTICAL residue GLY  383  index1  373  path  552  %Seq 100.00
Highlighted IDENTICAL residue LEU  384  index1  374  path  553  %Seq 100.00
Highlighted IDENTICAL residue GLU  386  index1  376  path  555  %Seq 100.00
Highlighted IDENTICAL residue ARG  389  index1  379  path  558  %Seq 100.00
Highlighted IDENTICAL residue ARG  391  index1  381  path  560  %Seq 100.00
Highlighted IDENTICAL residue PRO  394  index1  384  path  563  %Seq 100.00
Highlighted IDENTICAL residue SER  395  index1  385  path  564  %Seq 100.00
Highlighted IDENTICAL residue CYS  404  index1  394  path  573  %Seq 100.00
Highlighted IDENTICAL residue CYS  407  index1  397  path  576  %Seq 100.00
Highlighted IDENTICAL residue THR  410  index1  400  path  579  %Seq 100.00
Highlighted IDENTICAL residue GLY  411  index1  401  path  580  %Seq 100.00
Highlighted IDENTICAL residue VAL  413  index1  403  path  582  %Seq 100.00
Highlighted IDENTICAL residue GLU  417  index1  407  path  586  %Seq 100.00
Highlighted 125 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g04270-3-2bx2L.pir.txt.2BX2.pdb.conservation.pml

===============================================================================

The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g04270-3-2bx2L.pir.txt PIR amino_acid 2BX2.pdb _ 100.0 BLOSUM62.dat 

completed successfully.

@@@@@@@@@@@@@@@@@@@@ END  /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@

Ad blocker interference detected!


Wikia is a free-to-use site that makes money from advertising. We have a modified experience for viewers using ad blockers

Wikia is not accessible if you’ve made further modifications. Remove the custom ad blocker rule(s) and the page will load as expected.