>gi|30678106|ref|NP_850989.1| 619 residues, 50 /line glycoside hydrolase starch-binding domain-containing protein [Arabidopsis thaliana] ----------MQTDSEQDVESCDDNENNLNTDEQNHQLTET------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------LLPDGGFF-QSE S---IATTILINSSICTVQRIAVLEGGKLVELLLEPVK-TNVQCDSVYLGVITKFVPHMG GAFVNIGSARHSFMDIKSNREPFIFPPFCDGSK--KQAADGSPIL-SMNDIPAPHEIEHA SYDFEASSLLDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVN-GTVVNHGA------- ---------------------------------------VEVGSENGHIPMERGHSADSL DSNASVAKASKV--MSSKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVL LTRC-KRI-GVSKKI-SGVERTRLKVIAKTLQ-PQGF--GLTVRTVAAGHSLEELQKDLD GLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPR TYHEVTHYLQDMAPDLCNRVELHDKG-IPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV EALETTFSKIEQEICRQLVSV--------------------------------------- ------------------------------------------------------------ ---------------IISILFCY---------------FSFQP-------NEEHL----- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------E------------ >gi|110598301|ref|ZP_01386576.1| 535 residues, 50 /line ribonuclease, Rne/Rng family [Chlorobium ferrooxidans DSM 13031] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------MIIERPE-SRRSIGDIYLGRVHKVVEGLK AAFVDIGQKSDGFLHFSDVGTTS------------------------------------- ------------------------------------EDYRALIE-DDDDDDAVVGAEDAD GDDSLNAAPVQVQP-----AA--DQSVKASARSGGKRPS----------GDEQEKAEKRQ SYTQ---------------MIAGKLKPNDSILVQVIKEPISSKGSRLTSDITIAGRFMVL LPFGGGQV-AVSRRVVVRKERSRLKKLVRSML-PEGF--GAIIRTVAEDQEETLLKQDLE KLLAKWTQIEEKLQDA----------APPQLIFKEDTIISSVLRDSLTSDVTEIVANSSV IHKETLNYIQWAAPEMVKNVSLYQGK-LPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEH TEAMVVVDVNSGR--YAAKREQEENSLKTNLEAAREIVRQLRLRDIGGIIVVDFIDMLDQ KNAKKVYDSMKTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVV QARFTTINQIERWLRK-------------------------------------------- ----------------------------------------YALQHPLNF-QQLDLYVSPT VVEPLQNSDLKTELKWFLQHLLFVQVKPDESLRSDD--FRFYSRKN-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---NKDIT---AEYGDI------------ >gi|21675068|ref|NP_663133.1| 560 residues, 50 /line ribonuclease G [Chlorobium tepidum TLS] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MKK N---VKKQLLMNKIG-DEIQVALVEEGRLAELIIERPE-SMRSIGDIYLGRVHKVVEGLK AAFVDIGQKSDGFLHFSDVGTTS------------------------------------- ------------------------------------EDYRALVE-DDDNDENG-GDEDDD ENEGDDNAEAPAPP-----RE--AARPAGQQKS--EQGQ----------QSSGDAAERRQ SYTQ---------------MIAQKLKPNDSILVQVIKEPIGTKGSRLTSDITIAGRFMVL LPFGGGQI-AVSRRVVSRKERGRLKKLVRSML-PEGF--GAIIRTVAEDQDESLLKQDLE KLLAKWTQIEEKLQDA----------QPPQLIFKEDTIISSVLRDSLTTDVTEIVANSKS IYTETLNYIQWAAPDMVKNVSLYEGK-LPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEH TEAMVVVDVNSGR--YAAKREQEENSLKTNLEAAREVVRQLRLRDIGGIIVVDFIDMMDP KNSKKVYDAMKAELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVV QARFTTINQVERWLRK-------------------------------------------- ----------------------------------------FALQQKVPF-QQLDLHISPT VLEPMRNSDMKTEMKWFLQHLVFVRIKSDESLRSDD--FRFYNRKT-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---GADIT---AEFN-------------- >gi|78189942|ref|YP_380280.1| 568 residues, 50 /line Ribonuclease E and G [Chlorobium chlorochromatii CaD3] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MKK S---STKQLLMNKTG-DEIQVALVEEGRLVELIIERPE-SRRSIGDIYLGRVHKVVEGLK AAFVDIGQKSDGFLHFSDVGTTN------------------------------------- ------------------------------------EDYRALIE-DDDDDDAIIG-DDIE SDEATGQNDSEFDEASDGETT--VSAPKTVARSNSKKPS-----------SGEQSGEKPQ TYTQ---------------MIAGKLKPNDSILVQVIKEPISSKGSRLTSDITIAGRFMVL LPFGGGQV-AVSRRVVSRKERSRLKKLVRSIL-PEGF--GAIIRTVAEDQEEALLKQDLE KLLTKWKQIEEKLQDA----------TPPQLIFKEDTIISSVLRDSLTSDVSEIVANSPA IYKETLNYIEWAAPEMVKNVALYQGK-LPLFEGYAIAKDVESIFSRKVWLKSGGYIIIEH TEAMVVVDVNSGR--YAAKREQEENSLKTNLEAAREVVRQLRLRDIGGIIVVDFIDMLDP KNAKKIYDAVKTELRNDRAKSNILPMSDFGLMQITRERIRPSLMQRMGDQCPACGGTGIV QARFTTINQIERWLRK-------------------------------------------- ----------------------------------------YALQHPLRF-QQLDLYVSPT VLEPLQNSDMKTEMKWFLQHMLFVTVKGDESLRSDD--FRFYNRKN-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---NKDIT---AEYGEL------------ >gi|119355890|ref|YP_910534.1| 565 residues, 50 /line ribonuclease, Rne/Rng family [Chlorobium phaeobacteroides DSM 266] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MKK S---LNKQLLMNKTG-DEIQVALVEEGRLAELIIERPE-SRRSIGDIYLGRVHKVVEGLK AAFVDIGQKSDGFLHFSDVGTTT------------------------------------- ------------------------------------EDYRALIE-DDDDDDTTGT-DESD GDEIA-AV----LSQP---AVLPEQNGKSSARSGAKRLTAP--------AQDGEDGGRRQ SYTQ---------------MIAGKLKPNDSILVQVIKEPISTKGSRLTSDITIAGRFMVL LPFGGGQV-AVSRRVIARKERSRLKKLVRSML-PDGF--GAIIRTVAEMQEETLLKQDLE KLLAKWTQIEEKLQDA----------VPPQLIFKEDTIISSVLRDSLNADVTEIVANSPV IYKETLNYIQWAAPEMEKNVTLYQGK-LPLFEGYSIAKDVESIFSRKVWLKSGGYIIIEH TEAMVVIDVNSGR--YAAKREQEENSLKTNLEAAREIVRQLRLRDIGGIIVVDFIDMLDQ KNAKKVYDSMRTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVV QARFTTINQIERWLRK-------------------------------------------- ----------------------------------------YALQNTMKL-QQLDLYVSPT VAEPLQQSEMNTELKWFLQHLLFVRVKPDESLRSDD--FRFYSRKN-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---NKEIT---AEYGDL------------ >gi|67939525|ref|ZP_00532023.1| 572 residues, 50 /line Ribonuclease E and G [Chlorobium phaeobacteroides BS1] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MKK T---VKKQLLMNKSG-DEIQVALVEEGRLAELVIERPD-SLRSIGDIYLGRVHKVVEGLK AAFVDIGQKSDGFLHFSDVGTTT------------------------------------- ------------------------------------EDYRALIE-DDDDDDENGN-GDAD ADEEG-KAGMKTQQEQKEDTRRPSPAGNGQKNGGSRSKGNG--------ASAGKDGDGRQ SYTQ---------------MIAGKLKTNDSILVQVIKEPISNKGSRLTSDITIAGRFMVL LPFGGGQI-AVSRRVVSRKERARLKKLVRSML-PDGF--GAIIRTVAELQEEELLKKDLE KLLVKWEQIEEKLKDA----------KPPQLIFKEDTIISSVLRDSLTTDVTELVANSQS IHKETLNYIQWAAPEMEKNVFFYQGK-LPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEH TEAMVVVDVNSGR--YAAKKEQEENSLKTNLEASREVVRQLRLRDIGGIIVVDFIDMLDP KNSKKVYDSMKNELRQDRAKSNILPMSDFGLMQITRERIRPSLMQRMGDQCPACGGSGIV QARCTTINQIERWLRK-------------------------------------------- ----------------------------------------YALQKKMVF-QQLDLYVSPT VAEPLRDTDRNIEMKWFLQHLLFVRVKQDESLRSDD--FRFYARKN-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---SADLT---AEYGDL------------ >gi|68553030|ref|ZP_00592412.1| 551 residues, 50 /line Ribonuclease E and G [Prosthecochloris aestuarii DSM 271] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MKK T---VKKQLLMNKSG-DEIQVALVEDGRLAELVIERPD-SLRSIGDIYLGRVHKVVEGLK AAFVDIGQKSDGFLHFSDVGTTN------------------------------------- ------------------------------------EDYRALIE-DDEDDE-NGA-LEGE -DVEK-NDDVQAESKPRASEKAPRSATPE---------------------------RKRQ SYTQ---------------MIAGKLKANDSILVQVIKEPISNKGSRLTSDITIAGRFMVL LPFGGGQI-AVSRRVVSRKERSRLKKLVRSIL-PEGF--GAIIRTVAENQEEELLKKDLE KLLVKWQQIEEKLQDA----------KPPQLIFKEDTIISSVLRDSLNSDVTELVANCPS IYKETLNYILWAAPEMEKNVTLYQGK-LPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEH TEAMVVVDVNSGR--YAAKKEQEENSLKTNLEAAREVVRQLRLRDIGGIIVVDFIDMLDQ KNSKKVFDSMKTELRHDRAKSNILPLSDFGLMQITRERIRPSLMQRMGDQCPACGGSGVV QARYTTINQIERWLRK-------------------------------------------- ----------------------------------------YALQRKVMF-QKLDLYVSPT VAEPLCDEERKTEMKWFLQHMLFVKIKSDESLRSDD--FRFYLQKN-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---NKEIT---SEFSDL------------ >gi|145218838|ref|YP_001129547.1| 564 residues, 50 /line ribonuclease, Rne/Rng family [Prosthecochloris vibrioformis DSM 265] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MKK S---VKKQLLMNKTG-DEIQVALVEEGRLAELIIERPE-SRRSIGDIYLGRVHKVIEGLK AAFVDIGQKSDGFLHFSDVGTTT------------------------------------- ------------------------------------EDYKALIE-DDDDDDDGVE-GDEE GDAKG-SSAVQAE--PSGAKTVARSGGRGPSASGKD--------------SRSEQAEKRQ SYTQ---------------MIAGKLKANDSILVQVIKEPISTKGSRLTSDITIAGRFMVL LPFGGGQV-AVSRRVVSRKERARLKKLVRSML-PEGF--GAIIRTVAEMQEESLLRQDLE MLLGKWTQIEEKLKDA----------TPPQLIFKEDTIISSVLRDSLNSDVTEIVANSPS IHKETLNYIEWAAPDMVKNVSLYQGK-LPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEH TEAMVVVDVNSGR--YAAKREQEENSLKTNLEAAREVVRQLRLRDIGGIIVVDFIDMMDS RNSKKVYDTMKGELRNDRAKSNILPLSDFGVMQITRERIRPSLMQRMGDQCPACGGSGVV QARFTTINQIERWLRK-------------------------------------------- ----------------------------------------YALQQSMKF-QQLDLYVSPT VIEPLQNSDMKTEMKWFLQHLLFVRVKEDESLRSDD--FRFYSRKN-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---SKDIT---AEYGDL------------ >gi|67918586|ref|ZP_00512182.1| 566 residues, 50 /line Ribonuclease E and G [Chlorobium limicola DSM 245] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MKK S---MNKQLLMNKIG-DEIQVALVEEGRLAELTIERPE-SRRSIGDIYLGRVHKVVEGLK AAFVDIGQKSDGFLHFSDVGTTN------------------------------------- ------------------------------------EDYRALIE-DDDDDESVSS-DDGD GDAVE-VAA----TAGGGDPPAAGPHARGPQRNGGRK--GP--------VTEEEKAEKRQ SYTQ---------------MIAGKLKPNDSILVQVIKEPISSKGSRLTSDITIAGRFMVL LPFGGGQV-AVSRRVVVRKERARLKKLVRSML-PEGF--GAIIRTVAEQQEESLLKQDLE KLLTKWVQIEEKLKDA----------SPPQLIFKEDTIISSVLRDSLTSDVTEIVANSPV IYKETLNYIQWAAPEMEKNVSLYQGK-LPLFEGYSIAKDVESIFSRKVWLKSGGYIIIEH TEAMVVVDVNSGR--YAAKREQEENSLKTNLEAAREIVRQLRLRDIGGIIVVDFIDMLDP KNAKKVHDAMKTELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVV QARFTTINQIERWLRK-------------------------------------------- ----------------------------------------YALQQSMKF-QQLDLYVSPT VAEPLRNTEMKTELKWFLQHMVFVRVKQDESLRSDD--FRFYNRKN-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---NKDIT---AEYGEL------------ >gi|78185904|ref|YP_373947.1| 570 residues, 50 /line Ribonuclease E and G [Pelodictyon luteolum DSM 273] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MKK S---VKKQLLMNKTG-DEIQVALVEDGRLAELIIERPE-SRRSIGDIYLGRVHKVIEGLK AAFVDIGQKSDGFLHFSDVGTTT------------------------------------- ------------------------------------EDYRALIE-DDDDDDETAA-DETG TAEDG-ADEEEAPVAAGAPQ--EQQGSRQSSRSGGRKPQPQ--------QRKEDGAEKRQ SYTQ---------------LIAGKLKANDSILVQVIKEPISTKGSRLTSDITIAGRFMVL LPFGGGQV-AVSRRVVSRKERARLKKLVRSML-PEGF--GAIIRTVAEMQEETLLKQDLE KLLAKWTQIEEKLKDA----------APPQLIFKEDTIISSVLRDSLTSDVTEIVANSPS IHKETLNYIEWAAPEMVKNVSLYQGK-LPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEH TEAMVVVDVNSGR--YAAKREQEENSLRTNMEAAREVVRQLRLRDIGGIIVVDFIDMMDA RNSKKVYDSMKGELRNDRAKSNILPMSDFGIMQITRERIRPSLMQRMGDQCPACGGSGVV QARFTTINQIERWLRK-------------------------------------------- ----------------------------------------YALQHAMKF-QQLDLYVSPT VAEPLKNSDMNTELKWFLQHMLFVRVKQDESLRSDD--FRFYTRKD-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---SRDIT---AEYGDL------------ >gi|110640055|ref|YP_680265.1| 535 residues, 50 /line ribonuclease G [Cytophaga hutchinsonii ATCC 33406] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MSNELFISSSQ-SGDRIALIQEKRLVEYQFEDHT-RKFNVGDIYLGTVRKVVPGLN AAFIDVGYEKDAFLHYFDLGPKI------------------------------------- ------------------------------------KSLTKFTK-NAITSAST------- ---------------------------------------PA--------LLKKFELEAEI KKDG---------------KVSQVLEKGNPILVQVVKEPISTKGPRLSCEISLAGRYLVL VPFS-NVV-SVSKKITDKEERQRLVRLISSIR-PENF--GVIIRTVASNKEVAELDKDLR NLVKTWEDGIAILKKA----------RPRDLIIGELDRTSSILRDMLNESFDSINVDTKE LYDDLRSYIKNIAPDKERLVKLHQGK-TKMFESTGVEKQLKTLFGKSVSLSGGGYLIIEH TEALHVIDVNSGNK-SNNETSQEETALHTNLEACREVARQLRLRDMGGIIVVDFIDMKNL DNRKVIYERMKLEMKDDRSKNVILPLSKFGLMQITRERVRPQTNLITMEVCPTCNGTGKI SASIAITDQIEHKLDY-------------------------------------------- ----------------------------------------IITKQNE---KNITLVLHPY IYAYFTTGYISKRTKWFFKYFRWVKLRTDSSLGLTE--FKFLDEGA-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --QNIDME---SEATTEDYRSEEYITSEK >gi|126646091|ref|ZP_01718608.1| 523 residues, 50 /line putative ribonuclease E [Algoriphagus sp. PR1] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MSTELLIDSAQ-SGSRIALLQDKSLVELHSEGMD-NQFKVGDIYLGTVRKIVNGLN AAFIDVGYEKDAFLHYQDLGPNF------------------------------------- ------------------------------------NSLMKFTK-MVRNNNYS------- ---------------------------------------SY--------NLKGFENVPEI DKIG---------------KISSILSKNNQVLVQVVKEPISTKGPRLSCELSLPGRYLVL VPFS-DSV-NVSKKIRSSDERKRLLRLINSIK-PANF--GVIIRTVAEGQSVTELDKDLR NLLNNWEEGMQKLLKA----------KSRDKVIGEMSMASSLVRDLLNESFDAITVEEES TYDQIRSYIRSIAPEKEKIVRLYNGK-AKLFENFGIEKQIKSLFGQTVSLPQGGYVIIEH TEALHVIDVNSGNK-SNQESDQESTALKTNLVAAKEIARQLRLRDMGGIIVVDFIDMRKA ENKKVIYEAMKEELKMDRSKHTVLPLSKFGLMQITRQRVRPEVNIVTKETCPACNGTGKI QASILVADKLEKDLEH-------------------------------------------- ----------------------------------------IATIQNV---SQIHIGLHPY LHAYFTTGIISRRVKWFFKYYKWIKLIKDSSLPVTE--YRFQDESG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --EEIELK---VKSETE------------ >gi|117927963|ref|YP_872514.1| 702 residues, 50 /line ribonuclease, Rne/Rng family [Acidothermus cellulolyticus 11B] MPENEPNESVAKTDAPRRIRRSRRTAGSDTAAVESTSASPSRAPDAATLNDATPAGESGT GAPVAELPPVKRPAVPPPMVVFQPPPPVVFQAPEPAAVTSRRRRARRVPEEPSAALSSTD GAAGEPEIRSADLDDGSAPSEPAEQVSAATTEGITARRRRRRRRRTTGTAEDDRVLDAVE APETDTGSAGADDLDAAMALLTGSTRIEAKKQRRREGRELLRRNRRGMILTEAEFLARRE S---VERVMVVRQRG-DLTQIGVLEDGILVEHYVSTTS-ANRIVGNVYLGRVQNVLPGME AAFVDIGKGRNAVLYAGEVNFDL------------------------------------- ------------------------------------TGL--------------------- -----------------------------------------------------------E GQPQ---------------RIEAALKPGQTVVVQVTKDPIGHKGARLTSQISLPGRFLVF VPEGS-MM-GISRKLPD-TERNRLKAILRKIM-PEGA--GVIVRTAAEGASEEELARDIA RLMAQWEDIQKKAESG----------TAPALLYAEPDLTIRVVRDIFNEDFAQLVVQGDS EWDMVEAYVAHVAPDLLPRISHWTSD-EDVFAHYRIDEQLAKALDRRVWLPSGGYLIIDR TEAMVVIDVNTGRF-VGKGGNLEETVTKTNLEAAEEIVRQLRLRDIGGIIVIDFIDMLLE SNRELVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGLLEAFSEPCEVCGGRGVI IHTDPVTAQ------R-------------------------------------------- ----------------------------------------RAHRGRART-RQEAEPSAEP VAEPAAVGAAGAER---------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------RGRRSARAAS >gi|126662499|ref|ZP_01733498.1| 538 residues, 50 /line Ribonuclease G [Flavobacteria bacterium BAL38] -------------------MNLKTSINKTSRTEHK------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------QI-KMY C---MNKELIIRSGS-DAVDFALLKDGKLIELHKEEEKQSNFAVGDIFIAKIRKPVAGLN AAFVNLGHEKDAFLHYHDLGPNL------------------------------------- ------------------------------------PSLTKFIK-LVSAGKIK------- ---------------------------------------DY--------SLKNFPFEAEI DKDG---------------SINDILSANQSVLVQVVKEPISTKGPRISSEISLAGRYVVL VPFS-DRV-SVSQKIESREEKDRLKRLVQSIK-PKGF--GVIVRTVAEGKKVAELDKDLQ TLLDRWSAMSRRLQTA----------HHPSKVLGELNKASSILRDVFNDTFTGIYVDDED LYLETKEYLQEIAPDKVSIVKHYQSKDLPLFEKYNIERQIKTSFGKTVSMSKGAYLIIEH TEALHVIDVNSGNR-SSKATSQEGTALEVNMIAAAEIARQLRLRDMGGIIVVDFIDMQNP ENRKVLYDFLREEMSDDKAKHKILPPSKFGLIQITRQRVRPEVNIKTREEDPNN-EHREI EAPILIVDKIATDLER-------------------------------------------- ----------------------------------------IIKDH-----KKVVLNVHPF VAAYLSKGFPSLRSKWFFEYKKWVKIIPRDAYTYLE--YHFFDKEG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --NEIIVK--------------------- >gi|146299292|ref|YP_001193883.1| 543 residues, 50 /line ribonuclease, Rne/Rng family [Flavobacterium johnsoniae UW101] -----------MIFVFWFLVSLPTTINKQPTTNSR------------------------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------------------------------I-KIY S---VNKELIIRSSS-EAVDFALLKDGKLIELHKEEEK-SNFQVGDIFIAKIRKPVAGLN AAFVNVGFEKDAFLHYHDLGPNL------------------------------------- ------------------------------------ASQLKFIK-LVSAGKLK------- ---------------------------------------DF--------SLKTFQFEKEI DKDG---------------IITDILSANQSVLVQVVKEPISTKGPRISAELSLAGRFIVL VPFS-DRV-SISQKIEDKKEKDRLKKLVLSIK-PKGF--GVIVRTVAEGKNVAELEKDLQ NLLGRWSAMCKKLPTA----------HHPSKVLGELNRASSILRDVFNDTFSGIQIDDEE LYHQTKEYLQEIAPSKQSIVKFYQSNDTPIFEKYNIERQIKTSFGRTVSMSKGAYLIIEH TEALHVIDVNSGNR-SNKATNQEDTAMEVNMIAAAEIARQLRLRDMGGIIVVDFIDMSNP ENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRPEVNIKTREEDPNK-VNGEI EAPILIIDKITSDLER-------------------------------------------- ----------------------------------------LLKTH-----NKVVLNTHPF VAAYLSKGFPSLRSKWFFEHKKWVKIIPRDAYTYLE--YHFYDKKG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --NVITE---------------------- >gi|88804792|ref|ZP_01120312.1| 523 residues, 50 /line Ribonuclease G [Robiginitalea biformata HTCC2501] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------------------------MN Q---VNRELIVRSNS-NSVDFALLKNGKLIELHKDEDD-HKFNVGDIMLAKIRKPVTGLN AAFVNVGYEKDAFLHYHDLGPQL------------------------------------- ------------------------------------KSMLKFLK-LARSGRLK------- ---------------------------------------DF--------SLKNFSFEKDI DKNG---------------SIKDVVKPNQTMLVQIVKEPISTKGPRISSELSIAGRYLIL VPFS-DRV-SVSQKIGSKEEKDRLKRLVKSIK-PKGF--GVIIRTVAEGKKVAELDKDLE NLMSKWISMCKKINRA----------STPSKVLVELNRASSILRDVFNDSFSGIHVDDET LFNQIKDYVHEIAPDKESIVKLYSSN-VPIFEKFGIERQIKTSFGRTASMSKGAYLVIEH TEALHVIDVNSGNR-STKAKNQEDTALEVNLIAAAEVARQLRLRDMGGIIVIDFIDMVRP DHRKKLYNHLRDEMKDDRAKHKILPPSKFGLVQITRQRVRPEVNIKTTEVDPSG-NGQEV EAPIVLIEKISDELER-------------------------------------------- ----------------------------------------IMKGE-GRE-KAITLNAHPF IAAYLTKGFPSIRSKWFLEFKKWIKIQPRDAYSYLE--YRFTDKDG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --APLQEA------QEA------------ >gi|147677164|ref|YP_001211379.1| 561 residues, 50 /line ribonucleases G and E [Pelotomaculum thermopropionicum SI] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MLKEIVVNVGE-EETRVAVLEDRVPVEIYIERSV-NQRLVGNIFKGRVENVLPGMQ AAFVNIGLEKNAFLYVEDAIPAR-ALD--------------------------------- ------------------------------------------------------------ -------------------------------------------------------GHG-- -------------DSMLGANICDILKQGQEVLVQIVKEPIGTKGPRVTTHITLPGRYLVL MPTV-DYI-GISRRIESERERERLKELASRVK-PEGM--GVIVRTVAEGVDEEEFRQDVG LLTKLWRKVLSRAAHG----------PVPNLVHRDLELVQRILRDVFTEDVDRLILDSRY EYEKVLDLLDITGPRLKLKVFLDE-R-DSIFEEYGIEQEIEKALKRKVWLKSGGYLVIDQ AEALTAVDVNTGKY--VGTTNLEDTVLKTNLEAAREIARQLRLRNIGGIVIVDFIDMSRE EHRQEVVRTLEEEIKKDKTKTNILGITQLGLVEMTRKKVRPSLSEVIQKPCPYCDGKGRV LSEETLGISFKNQIYN-------------------------------------------- ----------------------------------------MARQ--TTA-KTILVEANPV VAARLIGSGGANLRDLENKTGKSLYIRGVASHHIESIVI--RPLHDNEQVQARTLP---- ------------------------------------------------------------ --------------------------------------VKPGEVLEVKVEEPHITNIRDG IAR---------------------------------------------VDGFILDIEGGG ALVGETI------------------------------------------PVEVSKVYRTY AKARP---------VRT------------ >gi|148652236|ref|YP_001279329.1| 613 residues, 50 /line ribonuclease, Rne/Rng family [Psychrobacter sp. PRwf-1] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MSEELLINVSP-MESRVAVLDNGVVSEVYIERHN-KLGLVGNIYLGTVVRVLPGMQ AAFVEIGQSRTAFLHVNDMRRIARPAPTADKAPEIRHNAKQEPTVLTSMPVDRCEHIAEN VVTASDTMASVIAETEPAMEADPLSAKTEIEAGSLREKKSALADESDNLKNDL------- ---------------------------------------LDNALLEIDSPDMVGNAITKA DTKPAAVKERQIIEPPRHELIQYRLHEGQKILVQVTKDQLGTKGARLTTNISLPSRYLVY LPSS-EHI-GISQRIDNEEERHRLKTELGALMQTVNLTGGLIARTAAERVPVAKLEEDIY YLVQLWRTIQARKEASA------GSGQSAVLIYQELSLPLRSIRDLVHPDTEKVIVDHEG MYNEVRQFAKEFVPFIYPRILPYSGE-QPLFDVHRVEEDLRDALKRRVDLKSGGYLIIDQ TEAMTTIDVNTGSF--VGGRSLEDTVYKTNLEATHAIARQLRLRNLGGIIILDFIDMLEQ QHKDDVLENLQYQLSQDYAKTKITQVSELGLVEMTRKRTRESLEQQLCEPCKTCEGKGFI KTAETVCFEIFREIMR-------------------------------------------- ----------------------------------------CART--YNSPKKFTVVAHAS VIDLLLSSEADTVADLEYLLGRVITFEVENLYTQEQYDIVL------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------D------------ >gi|149176937|ref|ZP_01855546.1| 519 residues, 50 /line ribonuclease E [Planctomyces maris DSM 8797] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MKKEMLVNVLQPEESRIAIVEDGILEELYVERNS-LENLVGNIYKGKVVNIEPSIQ AAFVDFGVGRNGFLHVSDIEHQY-YKH-----------LT---------D---------- ------------------------------------------------------------ ------------------------------------------GDGNGKPGRGRNQKGRRV NER----------SVANKPPIQEILKRGSEVLVQVIKEGLGNKGPTLSTYISIPGRYLVI MPGL-QRV-GISRKIADEDVRKDLRTILTQLAPPPGL--GFIVRTAGIDRTADDLKRDLN YLLRLWGTIVGRIKKL----------PTPVEIYSESDMMIRTIRDIYNSEIDTLYIDEPT AYQRARDFMKVVLPKHVNRVKHYTGN-DPIFYNSKLDDEICSIQNRHVPMKGGGSIVIDQ TEALVAIDVNSGNY--RADDNAEKTAFKVNMKAAEEISRQIRLRDLGGVIVIDFIDMREE KHRRSVERRLRELVKRDRARTKVLRISPFGLIEMTRQRIRPSLRRSMYEDCPSCRGTGQV KTAESMAIEVMRTLMT-------------------------------------------- ----------------------------------------TVNK--KNI-SRLVLNVHEN VANYLNNKRRKDITQLEETAQTSIIINARTDVEPEHLMARCYDDIG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --NEVNF---------------------- >gi|32475458|ref|NP_868452.1| 534 residues, 50 /line ribonuclease E [Rhodopirellula baltica SH 1] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MKREMLINVLQPEESRIAVVENNRLEELYVERKS-VENYSGNIYRGKIVNLEPSIQ AAFVDFGVGRNGFLHISDIEPQY-FRQ-----------GGYDPEE-IMRE---------- ------------------------------------------------------------ ------------------------------------------SDEMAEAAAQRNRESGRG STRVFK-----GGRPRNKPPIQEIFKRGDEVLVQVIKEGIGNKGPTLSTYISIPGRYLVL MPAL-SRV-GVSRKIEDEDDRKRLKKCLLSLSPPKGL--GFIVRTAGAGRSEDELQRDMD YLLRLWKAIVRRVENT----------TEPGEIYEESDLIIRTIRDIYSDDIDHILIDQKE SYEKARDFLKMVMPRVVDRLKYYDGP-GPLFHKYNLEEEIVKINQRQVALPDGGSIVIDP TEALVAIDVNSGNF--RGNASAEENAFRLNIAAAKEIARQLRLRDLGGVIVNDFIDMRKE SYRRKVERVLRDAMANDRARTKILRTSPFGLIEMTRQRIRPSLKRSIYKDCPCCEGRGLV KTPESMSIEVVRMLAL-------------------------------------------- ----------------------------------------AVKN--KHI-VRVTVRVNDE VSAFLNNKKRRTVSEMEECGNMTVQILGSEGLFPEHLEVDCRDEHG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --ERVEIDS-------------------- >gi|87306478|ref|ZP_01088625.1| 588 residues, 50 /line ribonuclease E [Blastopirellula marina DSM 3645] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MKKEMLINVSQPEECRIAIVEDGILEEFYLERTS-QDNYVGNIYKGVVVNLEPSIQ AAFVDFGVGKNGFLHISDVEPQY-FRQ-----------GGYDPAE-QLDDDFGGSYGGAT AADF---------SDDDEEEISDSSGDDEEDKPDANDD---------------------- ----------------------------------------GDGDSDDDAPPKPPQSRGRG QRRPQQRRQRPGMRPRVKPPIQEIFKRGDEVLVQVIKEGIGSKGPTLSTYISIPGRYLVL MPAL-GRV-GVSRKIEDDQVRRRLRSTLLELSPPKGL--GFIVRTAGQERNKKELSRDMA YLLRLWKVIVRRLKNT----------TGPCDIYEESDMIIRTIRDIFSSDVDSIYVDSEP AYERAKEFLQLVMPRHVNRLKKYESK-DPLFHKYHLDEEIARINQREVPLRRGGSIVIDQ TEALVAIDVNSGNF--RYDGTAEEAAYQLNMMAAKEIARQLRLRDLGGVVVNDFIDMRRE KHRRNVERALRDSVKRDRARTKILKTSPFGLIEMTRQRIRPSLKRSVFKDCPCCKGRGVV KSAESMAIEVVRMLLA-------------------------------------------- ----------------------------------------AAHH--DGA-SHVTIRVNDE VATYLNNKKRRELARIEEDTNIVVQIYGSESFYPEHLEVECVDADG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --RRLHFDDRPTGNARH------------ >gi|22325461|ref|NP_178508.2| 713 residues, 50 /line glycoside hydrolase starch-binding domain-containing protein [Arabidopsis thaliana] ----------MQTDSEQDVESCDDNENNLNTDEQNHQLTET------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------LLPDGGFF-QSE S---IATTILINSSICTVQRIAVLEGGKLVELLLEPVK-TNVQCDSVYLGVITKFVPHMG GAFVNIGSARHSFMDIKSNREPFIFPPFCDGSK--KQAADGSPIL-SMNDIPAPHEIEHA SYDFEASSLLDIDSNDPGESFHDDDDEHENDEYHVSDHLAGLVN-GTVVNHGA------- ---------------------------------------VEVGSENGHIPMERGHSADSL DSNASVAKASKV--MSSKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVL LTRC-KRI-GVSKKI-SGVERTRLKVIAKTLQ-PQGF--GLTVRTVAAGHSLEELQKDLD GLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPR TYHEVTHYLQDMAPDLCNRVELHDKG-IPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV EALETTFSKIEQEICRQLAKMEKRGD---------------------------------- ----------------------------------------LENP--KSW-PRFILRVDSH MSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGT--FEVKPFMDEKTVNERQHQ---- ------------------------------------------------------------ --------------------------------------VAISLLKK-----------ADA IAD---------------------------------------------SSG--------- ---KKKL------------------------------------------TLIPIKK---- -----EKT---SGKQRR------------ >gi|29346910|ref|NP_810413.1| 524 residues, 50 /line Ribonuclease G [Bacteroides thetaiotaomicron VPI-5482] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MTSEIVIDVQP-KEVSIALLEDKSLVELQSEGRN-ISFSVGNMYLGRIKKLMPGLN ACFVDVGYEKDAFLHYLDLGPQF------------------------------------- ------------------------------------NSLEKFVK-QTLSDKKK------- ---------------------------------------LN--------SISKATLLPDL DKDG---------------TVANTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVL IPFN-DKV-SVSQKIKSSEERARLKQLLMSIK-PKNF--GVIVRTVAEGKRVAELDGELK VLIKHWEDAMAKVQKAT---------KYPTLIYEETSRAVGLLRDLFNPSFENIHVNDEA VYNEIKDYVTLIAPDRANIVKLYKGQ-LPIYDNFGITKQIKSSFGKTVSYKSGAYLIIEH TEALHVVDVNSGNR-TKNANGQEGNALEVNLGAADELARQLRLRDMGGIIVVDFIDMNEA ENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDVNTTEICPTCFGKGTI KSSILFTDTLESKIDY-------------------------------------------- ----------------------------------------LVNK--LKV-KKFSLHVHPY VAAFINQGLVSLRRKWQMKYGFGIKIIPSQKLAFLQ--YVFYDTHG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --EEIDMK---EEIEIK------------ >gi|53712844|ref|YP_098836.1| 524 residues, 50 /line ribonuclease G [Bacteroides fragilis YCH46] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MTSELVVDVQP-KEVSIALLEDKSLVELQSEGRN-ISFSVGNMYLGRVKKLMPGLN ACFVDVGYEKDAFLHYLDLGPQF------------------------------------- ------------------------------------NSLEKYVK-QTLSDKKK------- ---------------------------------------LN--------PISKATLLPDL DKDG---------------TVANTLKVGQEVVVQIVKEPISTKGPRLTSEISFAGRYLVL IPFN-DKV-SVSQKIKSSEERARLKQLLMSIK-PKNF--GVIVRTVAEGKRVAELDGELK VLLKHWEESITKVQKAT---------KFPTLIYEETSRAVALLRDLFNPSFENIYVNNEA VFNEIRDYVTLIAPERAGIVKLYKGQ-LPIYDNFGITKQIKSSFGKTVSYKSGAYLIIEH TEALHVVDVNSGNR-TKNANGQEGNALEVNLGAADELARQLRLRDMGGIIVVDFIDMNEA ENRQKLYERMCANMQKDRARHNILPLSKFGLMQITRQRVRPAMDVNTTETCPTCFGKGTI KSSILFTDTLESKIDY-------------------------------------------- ----------------------------------------LVNK--LKI-KKFSLHIHPY VAAYLNQGLMSLKRKWQMKYGFGIKIIPSQKLAFLE--YVFYDSHG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --EEIDMK---EEFEIK------------ >gi|83589420|ref|YP_429429.1| 562 residues, 50 /line ribonuclease, Rne/Rng family [Moorella thermoacetica ATCC 39073] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MLKEILIQDDA-EETAVALLEDGRLMEIYLERDS-NQRLVGNIYKGRVANVLPGMQ AAFVDIGLEKNAFLFVDDTSGIE------------------------------------- ------------------------------------ALE--------------------- -------------------------------------------------------GEIVS RSRR---------------RISDVVREGQEILVQVAKEPQGTKGARVTTQITLPGRYLVL MPTV-NYI-GVSRRISHEEERERLKNLARAVK-PRRM--GLIVRTVAAGAGLEELQADCQ NLTRTWKRIRQAARR-S---------KAPRLVHHDVELSLRILRDLYADDVNRLVVNSPA TYAKVLEVLAGRAPNLRQRVILRE-N-ADLFAVYGVQNQIEQALKRKVWLRCGGYLIIDQ MEALTAIDVNTGKY-V-GRHNLAETVLTTNLEAAVEVARQLRLRNIGGIIVVDFIDMDNP LHREQVIKVLEGELTKDKTKTQILGFTRLGLLEMTRKKAQQRLESVLQQDCPYCHGTGKV LSAETVTLKARKEILQ-------------------------------------------- ----------------------------------------LAAV--SKA-RAILAEANPA VAAPLIGVGGANLRTLERRAGKKLIIKGNENFHLEE--VRLRELFDREEIANLSTP---- ------------------------------------------------------------ --------------------------------------VKVGQVLQVTIEGVHTGNGGDG IAR---------------------------------------------VAGFVLDIPGGA AYLGREV------------------------------------------PVEITRVFRTY ARARLLAN--------A------------ >gi|83814929|ref|YP_444634.1| 596 residues, 50 /line ribonuclease, Rne/Rng family subfamily [Salinibacter ruber DSM 13855] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MSKEIVFNVGN-EQTRIAIVEDGKLVELYIENAE-HKRTIGNLYLGQIRKVMPSIQ AAFVDIGQEQDAFLHFSDLSDNL------------------------------------- ------------------------------------PYLLDFLG-LEAPTVEA------- ---------------------------------------ID-------------VPKGKK DWDK---------------RPSDLLNRGQTILVQVTKEPISNKGSRISTDISLAGRFLVL VPLQ-NYV-AVSRKITDDEERRRLESLASSLV-PDGV--GVIVRTVAQDRDAKSLDKDMK LLMERWRRVEKRLKDKP---------SPPELVHEDVDMASSIVRDEFSEEYDRILVDHEG LYSSIQSYVRAVGPQLVDRVELHEGD-QPVFESVGIQHGADRAFKDRVELPSGGYLFIEK TEAMHVVDVNSGRS-G-KGKSQAENSLNVNLEAARVIARQIRLRDLGGIIVVDFIDLRDE DDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTTFSSANGTPSDDGDD GADPEELRQAERKIQS-LEKEVEKREREVKRLKAEDDTPDEEVTALRQKIQALEDKLEAA RAQQTAENATPRPSSSDGSAASAEGDAAPDELVEDIEQWLVAHS--DTH-RAVTLRVHPF VAAFLRRPVPTYTTRWFMEHLVRVHVEADTEVPPHT--FQVTDESG-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --APLPES--------P------------ >gi|119469427|ref|ZP_01612366.1| 564 residues, 50 /line RNase E: endoribonuclease for rRNA processing and mRNA degradation; member of the degradosome; involved in the production of [Alteromonadales bacterium TW-7] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----MKR-MLINATQQEEMRVALVDGQRLYDLDIESPG-HEQKKANIYKGKITRIEPSLE AAFVDYGADRHGFLPLKEIARTY-FPA--------------------------------- ------------------------------------------------------------ ---------------------------------------------------GYTFNG--- -----------------RPNIRDVIKEGQEVIIQVDKEERGQKGAALTTFISVAGSYLVL MPNN-PRAGGISRRIEG-DERTELKEALSRLELPKGM--GLIVRTAGVGKSFEELNYDLK ALLVHWEAIRQAADSA----------KAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPR VFEEAKAHIERFRPDFMSRVKLYQGD-TPLFTHYQIESQIESAFQREVRLPSGGSIVIDP TEALTSIDINSSKA--TKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPP RHQREVENRLKDAARPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGVCPRCSGQGTV RSNESIALSILRLIEE-------------------------------------------- ----------------------------------------EAIK--DNT-SQVNAQVPVA VAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETPHYEVMRL----RKDET---LETVSY EQV----VAPEPEAFEMSKSPAAP--VREEPMLKGVV----M------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------PSSPAPQAAPAPAAKPAA--VAAKEEAGLLL HLL---LV--------------------- >gi|52842507|ref|YP_096306.1| 667 residues, 50 /line ribonuclease E [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------MGL Y---MEK-MLINAMQTEEIRVALIKNNQLFDLDIECPG-EIKKKGNIYKAIVTRREPSLD AVFVEYGSKRQGFLPLKEIAPEY-LSK--------------------------------- ------------------------------------------------------------ ---------------------------------------------------NPEEFG--- ---------------DEKPPITSLIREGQELLIQVDKEERGNKGAALTTFITLAGCYLVL MPNN-PHSGGISRRIEG-DERDELRETLNALTLPEDM--GLIIRTAGVGKSLEELQDDLN MLCNQWQSIKEAYNSE----------LAPCLIHQEGDVIIRSIRDNLRKSISEIIIDDQI SYIKAKQYIERVKPEFLPNLKLYNSS-IPLFNFYQIESQIETAYQRQVMLPSGGALVIDR TEALVSIDINSAKA--TGGADIEATALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSS KNQREVENRLKEALQADRARIQVGRISRFGLLEMSRQRLRLSLGETAQEICPRCEGRGTV RSIQSHGLSITRLIEE-------------------------------------------- ----------------------------------------EALK--EKT-AEIQVQLPPE MATFIMNEKRNFIRDIEKRHGVSVVVIANPYMHPPQYTITRL----KEDNV---GKSKKP SYS----LIQQPEVHVPSSDKEPV--SHDEPAVKSFA----E-HRVIKHPQTSF-IK--- -------RLWTSLFGGHSVAHTVTQEPGKKHHRAQNQG-----KHASSKSSGGDKRQQGS N-----ANRRRRSGGGQ------QRSSSGN-----TN----------------------- -AAAS---------------T----HQQRKKSNANQQSHGSQQSNRS--IPAKNEGNKKR EAI---LA---KEPEEK------------ >gi|145627603|ref|ZP_01783423.1| 628 residues, 50 /line ribonuclease, Rne/Rng family [Shewanella baltica OS185] ------------------------------------------------------------ ------------------------------------------------------------ ------MQRSA------------------------------------------------- ------------------------------------------------MFDDLY---LKK NDVIMKR-MLINATQSEELRVALVDGQQLYDLDIESPG-HEQKKSNIYKGKITRVEPSLE AAFVDYGADRHGFLPLKEIAREY-FPK--------------------------------- ------------------------------------------------------------ ---------------------------------------------------GYSFQG--- -----------------RPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL MPNN-PRAGGISRRIEG-DERTELKEAMADLEVPAGM--GLIVRTAGVGKESAELKWDLK VLQHHWAAITEASQVK----------GAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPR IFEEAKQHIALVRPDFVERVKLYEAE-VPLFTHFQIESQIESAFQREVRLPSGGSIVIDP TEALTSIDINSARA--TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPV RHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTI RSTESLALSILRLMEE-------------------------------------------- ----------------------------------------EAIK--ENT-SQIEAIVPVD VAAFLLNEKRKAIRITEQRHDVEVYVIPDAHMMTPDYRVIRH----RSDDE---ISESSY KRI----EQPEAKLYEPRK-LERT--AAPIPALKGFA----APQKVEQAPSPTVKVE--- -------APQPGFFSKLVSAISAMFAPSEKAEPVKVVE-----TKTTDTSAANANRRNRR N-----DTRRPRNAQDA------D------------------------------------ ------------------------------------------------------------ ------------KAXEG------------ >gi|124120794|gb|EAY39537.1| 619 residues, 50 /line ribonuclease E [Vibrio cholerae MZO-3] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------MLINATQKEELRVALVDGQRLFDLDIESPG-HESKKANIYKGRITRIEPSLE AAFVDYGAERHGFLPLKEIAREY-FPD--------------------------------- ------------------------------------------------------------ ---------------------------------------------------GYSYQG--- -----------------RPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVL MPNN-PRAGGISRRIEG-DERTELKSALSSLELPQGM--GLIVRTAGVGKSAEELEWDLN VLLKHWSAIKQASDSN----------PAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNS IYERALEHIRLVRPDFVNRVKKYEGE-VPLFSHFQIESQIESAFQREVRLPSGGSIVIDP TEALTSIDINSARA--TKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPV RHQREVENRLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVI RDNESLALSVLRLIEE-------------------------------------------- ----------------------------------------EALK--DNT-SQVLAVVPVS IASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRV----REGE---EQDVLSY LIPKKLEAMKEAE-GKEVVDVELKPKRIEEPVLKGFA----APAEAVPAPTPKPKAEPQP VAE-VQQPAQPGFFSRVFKAIASLFSETPEAAKVEAPV-----TQNSEQDKPRRERNDRN N-----DRR--RNPRDK------------------------------------------- ------------------------------------------------------------ ------------NRRRG------------ >gi|67641114|ref|ZP_00439899.1| 607 residues, 50 /line COG1530: Ribonucleases G and E [Burkholderia mallei GB8 horse 4] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------MLFNATQQEELRVAIVDGQKLIDIDIETAG-REQRKGNIYKGVVTRIEPSLE ACFVNYGEDRHGFLPFKEVARQY-FKE--------------------------------- ------------------------------------------------------------ ---------------------------------------------------GVDMR---- -----------------SARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVL MPNN-PRGGGVSRRIEG-DERQELRETMAQLQIPDGM--SMIARTAGIGRSAEELQWDLN YLLQLWRAIEAASQSGH--------PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTE IHDQARAFMDIVMPDNVGKVKRYHDD-VPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDH TEALVAIDVNSARA--TKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESA KSQREVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHI RDTESSALQVLRIIQE-------------------------------------------- ----------------------------------------EAMK--ENT-AAIHCQVPVE VTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDTPHYKLERL----RHDDARLDDPRASW KMAEEAARELEAETGYSKRAEETKPR--QEAAVKGIT-----PERPAPSPAPQRQSAPEA AAPVAAAPASGGGFMKWLKE------MAEGPVWR-------------------------- -----------------AAGCGARTGARRA-----GN----------------------- -GCASGA--------------------------------------------------RAR GAW-------------------------- >gi|84361209|ref|ZP_00985887.1| 707 residues, 50 /line COG1530: Ribonucleases G and E [Burkholderia dolosa AUO158] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------MLFNATQQEELRVAIVDGQKLIDIDIETAG-REQRKGNIYKGVVTRIEPSLE ACFVNYGEDRHGFLPFKEVARQY-FKE--------------------------------- ------------------------------------------------------------ ---------------------------------------------------GVDMR---- -----------------SARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVL MPNN-PRGGGVSRRIEG-DERQELRETMAQLQIPDGM--SMIARTAGIGRSAEELQWDLN YLLQLWRAIEAASQSGN--------PGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTE IYDQARAFMDIVMPDNVSKVKRYHDD-VPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDH TEALVAIDVNSARA--TKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESA KSQREVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHI RDTESSALQVLRIIQE-------------------------------------------- ----------------------------------------EAMK--ENT-AAIHCQVPVE VTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERL----RHDDARLDDPRASW KMAEEAARELESETGYSKRAADVKPK--QEAAVKGIT-----PERPAPSAAPQRPVEPVA APAPAPVAAASGGFIGWLNG---LFGMSPAPAPAPAAP----APAKEQASRPARERAEKA E--QRGETR--RRSQPAIAACGAQAGYKAAVDQACER----------------------- -PCGQAATPRKRERLRKRASR----VTDAKVVKAAKVAVSATDSNRASRVKAVTRANRAR AASRVNRA---SEPSSR------------ >gi|95926894|ref|ZP_01309664.1| 715 residues, 50 /line hypothetical protein CburR_01001281 [Coxiella burnetii RSA 331] ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------MLINATQPDEVRVAITDDSKLIDLDIEIPG-QEQKKSNIYKGIITSIEPSLG AVFVNYGSERHGFLPLKEISREY-FLQ--------------------------------- ------------------------------------------------------------ ---------------------------------------------------DIEGDF--- ----------------DSIDINRVLKLGQELVVQVDKEERGTKGAALTTFISLAGSFLVL MPNN-PRAGGISRRIEG-DERDQLRETINQLSLPEGM--GLIVRTAGLGRPKEELEWDLK ILLRYWEAVKQAAVAK----------PGPYLIHQESDVIIRAIRDYLRQDVEEILIDDEV AFENARHYINQVRPQFVERLKLYREH-LPLFSRFQIEQQIENAHQREIRLPSGGSLIIDH SEALIAIDINSARA--TRGASIEETALSTNLEAAEEIARQLRIRDIGGLIVIDFIDMTPL RNQREVENCLRNALSQDRARIQIGRISRFGLLEMSRQRLRSSLTRSTQIACPRCNAEGTI RSIESLGLSIIHIIQE-------------------------------------------- ----------------------------------------QASK--AKN-IHFQLQAPVD LATYLINEKRELLRGIEHHYPVKITIVPNQYMETPLYQLRQI----KIDPASLE---HGK GMASYKLTKVFKTEAPQK--QEIR--ALSEPAIQQFLTSPPAPTTPRKTPTP-------- -----------GLFKRLMGK---MFGSEEEPSTAVTPPVKPHVPERHKPSSPPRGRRQGG YASRKSTGP--RRHHPRSGGGDHGQNRHGARSRRGTRGGRRDHGGGRGGPGYHTQSTGPM PPLGEDVVDVNQLPMSTPPSPPPPFLTDADVPPSRDERRSGGINGDADHGAKPHPNGKVS DDNRGN----------R------------
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