FANDOM


&&&&&&&&&&&&&&&&&&&& BEGIN  /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues &&&&&&&&&&&&&&&&&&&&

Successfully read 2 file paths from WYRM_file_paths.txt

generic_input                                         /usr/local/www/html/proteins/workspace/
generic_output                                        /usr/local/www/html/proteins/htdocs/results/

======================================================

Sequence file type = 3

Sequence type = 3

Got here 1
Got here 2
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Sequence 1
Got here 3
Got here 4
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Got here 4
Got here 3
Got here 4
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Got here 3
Got here 4
Got here 3
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Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Sequence 2
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
Got here 4
Got here 3
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Got here 3
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Got here 4
Read 2 amino_acid sequences from PIR Sequence file /usr/local/www/html/proteins/workspace/At2g04270-1-2bx2L.pir.txt

======================================================

Assigned types to 996 residues in Sequence 2-4270-1, 14 remain unknown
Assigned types to 515 residues in Sequence 2bx2L, 495 remain unknown

======================================================

Successfully read 576 entries for residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

Read the residue match scoring matrix /usr/local/www/html/proteins/workspace/BLOSUM62.dat

======================================================

Translated sequence file At2g04270-1-2bx2L.pir.txt into sequence alignment.

======================================================

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code C for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code A for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code G for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

Error in function WYRM_amino_acid_type_from_3letter_code()
Unknown 3-letter code U for amino acid

>2BX2.pdb  Made from 4076 ATOM records in 2BX2.pdb
AHIEGRHMKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYK
GKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPRPNIKDVLREGQEV
IVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIELKEALA
SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL
IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI
KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINS
ARGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGT
GTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVN
AIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAM
XXXXXXXXXXXXXX

======================================================

Best alignment:
2BX2.pdb    94  LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG---GIS   140
                +R+G ++IVQ+ KE  G KG  LT +  L   + VL+    R G    IS
2-4270-1   534  VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKIS   583

2BX2.pdb   140  --RRIELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW---   185
                   R  LK    +L+ P+G GL VRT   G S E LQ DL   L  W   
2-4270-1   584  GVERTRLKVIAKTLQ-PQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNI   632

2BX2.pdb   185  -----EAIKKAAE--SRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP   228
                      A   A E      P L+H+     +   +DY    + ++++D+P
2-4270-1   633  TDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP   682

2BX2.pdb   229  KVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR   278
                +       ++  +  PD  ++++L+   IPLF  Y+IE +IE    + V 
2-4270-1   683  RTYHEVTHYLQDMA-PDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVP   731

2BX2.pdb   279  LPSGGSIVIDSTEALTAIDINSA-----RGDIEETA-FNTNLEAADEIAR   322
                L +GGS+VI+ TEAL +ID+N       +G+ +E A    NL AA +IAR
2-4270-1   732  LSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR   781

2BX2.pdb   323  QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRF   372
                ++RLRD+GG+IV+DFIDM    ++R V   +++AV +DR+ +++S +SR 
2-4270-1   782  EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRH   831

2BX2.pdb   373  GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES   408
                GL+E++R+R+ PS+       C  C  TG V   E+
2-4270-1   832  GLMEITRKRVRPSVTFMISEPCSCCHATGRVEALET   867

======================================================

Highlighted IDENTICAL residue ARG   95  index1   95  path  545  %Seq 100.00
Highlighted IDENTICAL residue GLY   97  index1   97  path  547  %Seq 100.00
Highlighted IDENTICAL residue ILE  101  index1  101  path  551  %Seq 100.00
Highlighted IDENTICAL residue VAL  102  index1  102  path  552  %Seq 100.00
Highlighted IDENTICAL residue GLN  103  index1  103  path  553  %Seq 100.00
Highlighted IDENTICAL residue LYS  106  index1  106  path  556  %Seq 100.00
Highlighted IDENTICAL residue GLU  107  index1  107  path  557  %Seq 100.00
Highlighted IDENTICAL residue GLY  110  index1  110  path  560  %Seq 100.00
Highlighted IDENTICAL residue LYS  112  index1  112  path  562  %Seq 100.00
Highlighted IDENTICAL residue GLY  113  index1  113  path  563  %Seq 100.00
Highlighted IDENTICAL residue LEU  116  index1  116  path  566  %Seq 100.00
Highlighted IDENTICAL residue THR  117  index1  117  path  567  %Seq 100.00
Highlighted IDENTICAL residue LEU  122  index1  122  path  572  %Seq 100.00
Highlighted IDENTICAL residue VAL  128  index1  128  path  578  %Seq 100.00
Highlighted IDENTICAL residue LEU  129  index1  129  path  579  %Seq 100.00
Highlighted IDENTICAL residue ARG  135  index1  135  path  585  %Seq 100.00
Highlighted IDENTICAL residue GLY  137  index1  137  path  588  %Seq 100.00
Highlighted IDENTICAL residue ILE  139  index1  139  path  593  %Seq 100.00
Highlighted IDENTICAL residue ARG  142  index1  142  path  598  %Seq 100.00
Highlighted IDENTICAL residue ILE  143  index1  143  path  599  %Seq 100.00
Highlighted IDENTICAL residue LEU  151  index1  145  path  601  %Seq 100.00
Highlighted IDENTICAL residue LYS  152  index1  146  path  602  %Seq 100.00
Highlighted IDENTICAL residue LEU  158  index1  152  path  608  %Seq 100.00
Highlighted IDENTICAL residue PRO  161  index1  155  path  611  %Seq 100.00
Highlighted IDENTICAL residue GLY  163  index1  157  path  613  %Seq 100.00
Highlighted IDENTICAL residue GLY  165  index1  159  path  615  %Seq 100.00
Highlighted IDENTICAL residue LEU  166  index1  160  path  616  %Seq 100.00
Highlighted IDENTICAL residue VAL  168  index1  162  path  618  %Seq 100.00
Highlighted IDENTICAL residue ARG  169  index1  163  path  619  %Seq 100.00
Highlighted IDENTICAL residue THR  170  index1  164  path  620  %Seq 100.00
Highlighted IDENTICAL residue GLY  174  index1  168  path  624  %Seq 100.00
Highlighted IDENTICAL residue SER  176  index1  170  path  626  %Seq 100.00
Highlighted IDENTICAL residue GLU  178  index1  172  path  628  %Seq 100.00
Highlighted IDENTICAL residue LEU  180  index1  174  path  630  %Seq 100.00
Highlighted IDENTICAL residue GLN  181  index1  175  path  631  %Seq 100.00
Highlighted IDENTICAL residue ASP  183  index1  177  path  633  %Seq 100.00
Highlighted IDENTICAL residue LEU  184  index1  178  path  634  %Seq 100.00
Highlighted IDENTICAL residue LEU  188  index1  182  path  638  %Seq 100.00
Highlighted IDENTICAL residue TRP  191  index1  185  path  641  %Seq 100.00
Highlighted IDENTICAL residue GLU  192  index1  186  path  650  %Seq 100.00
Highlighted IDENTICAL residue ILE  194  index1  188  path  652  %Seq  50.00
Highlighted IDENTICAL residue LYS  195  index1  189  path  653  %Seq  50.00
Highlighted IDENTICAL residue LYS  196  index1  190  path  654  %Seq  50.00
Highlighted IDENTICAL residue ALA  197  index1  191  path  655  %Seq  50.00
Highlighted IDENTICAL residue ALA  198  index1  192  path  656  %Seq  50.00
Highlighted IDENTICAL residue GLU  199  index1  193  path  657  %Seq  50.00
Highlighted IDENTICAL residue SER  200  index1  194  path  660  %Seq  50.00
Highlighted IDENTICAL residue ARG  201  index1  195  path  661  %Seq  50.00
Highlighted IDENTICAL residue PRO  204  index1  198  path  664  %Seq 100.00
Highlighted IDENTICAL residue LEU  206  index1  200  path  666  %Seq 100.00
Highlighted IDENTICAL residue HIS  208  index1  202  path  668  %Seq 100.00
Highlighted IDENTICAL residue ASP  220  index1  214  path  680  %Seq 100.00
Highlighted IDENTICAL residue TYR  221  index1  215  path  681  %Seq 100.00
Highlighted IDENTICAL residue ASP  232  index1  226  path  692  %Seq 100.00
Highlighted IDENTICAL residue PRO  234  index1  228  path  694  %Seq 100.00
Highlighted IDENTICAL residue PRO  250  index1  244  path  710  %Seq 100.00
Highlighted IDENTICAL residue ASP  251  index1  245  path  711  %Seq 100.00
Highlighted IDENTICAL residue LEU  258  index1  252  path  718  %Seq 100.00
Highlighted IDENTICAL residue ILE  263  index1  257  path  723  %Seq 100.00
Highlighted IDENTICAL residue PRO  264  index1  258  path  724  %Seq 100.00
Highlighted IDENTICAL residue LEU  265  index1  259  path  725  %Seq 100.00
Highlighted IDENTICAL residue PHE  266  index1  260  path  726  %Seq 100.00
Highlighted IDENTICAL residue TYR  269  index1  263  path  729  %Seq 100.00
Highlighted IDENTICAL residue ILE  271  index1  265  path  731  %Seq 100.00
Highlighted IDENTICAL residue GLU  272  index1  266  path  732  %Seq 100.00
Highlighted IDENTICAL residue ILE  275  index1  269  path  735  %Seq 100.00
Highlighted IDENTICAL residue GLU  276  index1  270  path  736  %Seq 100.00
Highlighted IDENTICAL residue VAL  283  index1  277  path  743  %Seq 100.00
Highlighted IDENTICAL residue LEU  285  index1  279  path  745  %Seq 100.00
Highlighted IDENTICAL residue GLY  288  index1  282  path  748  %Seq 100.00
Highlighted IDENTICAL residue GLY  289  index1  283  path  749  %Seq 100.00
Highlighted IDENTICAL residue SER  290  index1  284  path  750  %Seq 100.00
Highlighted IDENTICAL residue VAL  292  index1  286  path  752  %Seq 100.00
Highlighted IDENTICAL residue ILE  293  index1  287  path  753  %Seq 100.00
Highlighted IDENTICAL residue THR  296  index1  290  path  756  %Seq 100.00
Highlighted IDENTICAL residue GLU  297  index1  291  path  757  %Seq 100.00
Highlighted IDENTICAL residue ALA  298  index1  292  path  758  %Seq 100.00
Highlighted IDENTICAL residue LEU  299  index1  293  path  759  %Seq 100.00
Highlighted IDENTICAL residue ILE  302  index1  296  path  762  %Seq 100.00
Highlighted IDENTICAL residue ASP  303  index1  297  path  763  %Seq 100.00
Highlighted IDENTICAL residue ASN  305  index1  299  path  765  %Seq 100.00
Highlighted IDENTICAL residue GLY  313  index1  303  path  774  %Seq 100.00
Highlighted IDENTICAL residue GLU  317  index1  307  path  778  %Seq 100.00
Highlighted IDENTICAL residue ASN  323  index1  313  path  785  %Seq 100.00
Highlighted IDENTICAL residue LEU  324  index1  314  path  786  %Seq 100.00
Highlighted IDENTICAL residue ALA  326  index1  316  path  788  %Seq 100.00
Highlighted IDENTICAL residue ALA  327  index1  317  path  789  %Seq 100.00
Highlighted IDENTICAL residue ILE  330  index1  320  path  792  %Seq 100.00
Highlighted IDENTICAL residue ALA  331  index1  321  path  793  %Seq 100.00
Highlighted IDENTICAL residue ARG  332  index1  322  path  794  %Seq 100.00
Highlighted IDENTICAL residue ARG  335  index1  325  path  797  %Seq 100.00
Highlighted IDENTICAL residue LEU  336  index1  326  path  798  %Seq 100.00
Highlighted IDENTICAL residue ARG  337  index1  327  path  799  %Seq 100.00
Highlighted IDENTICAL residue ASP  338  index1  328  path  800  %Seq 100.00
Highlighted IDENTICAL residue GLY  340  index1  330  path  802  %Seq 100.00
Highlighted IDENTICAL residue GLY  341  index1  331  path  803  %Seq 100.00
Highlighted IDENTICAL residue ILE  343  index1  333  path  805  %Seq 100.00
Highlighted IDENTICAL residue VAL  344  index1  334  path  806  %Seq 100.00
Highlighted IDENTICAL residue ASP  346  index1  336  path  808  %Seq 100.00
Highlighted IDENTICAL residue PHE  347  index1  337  path  809  %Seq 100.00
Highlighted IDENTICAL residue ILE  348  index1  338  path  810  %Seq 100.00
Highlighted IDENTICAL residue ASP  349  index1  339  path  811  %Seq 100.00
Highlighted IDENTICAL residue MET  350  index1  340  path  812  %Seq 100.00
Highlighted IDENTICAL residue ARG  357  index1  347  path  819  %Seq 100.00
Highlighted IDENTICAL residue VAL  359  index1  349  path  821  %Seq 100.00
Highlighted IDENTICAL residue ALA  366  index1  356  path  828  %Seq 100.00
Highlighted IDENTICAL residue VAL  367  index1  357  path  829  %Seq 100.00
Highlighted IDENTICAL residue ASP  370  index1  360  path  832  %Seq 100.00
Highlighted IDENTICAL residue ARG  371  index1  361  path  833  %Seq 100.00
Highlighted IDENTICAL residue SER  377  index1  367  path  839  %Seq 100.00
Highlighted IDENTICAL residue SER  380  index1  370  path  842  %Seq 100.00
Highlighted IDENTICAL residue ARG  381  index1  371  path  843  %Seq 100.00
Highlighted IDENTICAL residue GLY  383  index1  373  path  845  %Seq 100.00
Highlighted IDENTICAL residue LEU  384  index1  374  path  846  %Seq 100.00
Highlighted IDENTICAL residue GLU  386  index1  376  path  848  %Seq 100.00
Highlighted IDENTICAL residue ARG  389  index1  379  path  851  %Seq 100.00
Highlighted IDENTICAL residue ARG  391  index1  381  path  853  %Seq 100.00
Highlighted IDENTICAL residue PRO  394  index1  384  path  856  %Seq 100.00
Highlighted IDENTICAL residue SER  395  index1  385  path  857  %Seq 100.00
Highlighted IDENTICAL residue CYS  404  index1  394  path  866  %Seq 100.00
Highlighted IDENTICAL residue CYS  407  index1  397  path  869  %Seq 100.00
Highlighted IDENTICAL residue THR  410  index1  400  path  872  %Seq 100.00
Highlighted IDENTICAL residue GLY  411  index1  401  path  873  %Seq 100.00
Highlighted IDENTICAL residue VAL  413  index1  403  path  875  %Seq 100.00
Highlighted IDENTICAL residue GLU  417  index1  407  path  879  %Seq 100.00
Highlighted 125 residues for visualization

Wrote PyMOL macro into file /usr/local/www/html/proteins/htdocs/results/At2g04270-1-2bx2L.pir.txt.2BX2.pdb.conservation.pml

===============================================================================

The program

/usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues At2g04270-1-2bx2L.pir.txt PIR amino_acid 2BX2.pdb A 100.0 BLOSUM62.dat 

completed successfully.

@@@@@@@@@@@@@@@@@@@@ END  /usr/local/www/html/proteins/Compiled_Programs/WYRM/PyMOL_highlight_conserved_residues @@@@@@@@@@@@@@@@@@@@

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