In the plant Arabidopsis thaliana, At2g01940.1 is a gene model for the locus At2g01940.[1]
Also known as SGR5, and ATIDD15, this gene model is classified by TAIR as "SGR5 (SHOOT GRAVITROPISM 5); nucleic acid binding / transcription factor/ zinc ion binding". It is located on chr2, region 432651-434916 FORWARD.
Physiological function[]
At2g01940.1/Function_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ ______________ ________________ (At1g78590) NADK3 (At1g78590) is a NAD(H) kinase with a strong preference for NADH over NAD+. NAD(H) kinases phosphorylate NAD(H) with ATP (other phosphoryl donors are not used preferentially) to form NADP(H). Phosphorylation of NAD(H) is the sole known means of generating NADP(H) de novo.
Tissue expression[]
At2g01940.1/Expression
Subcellular localization[]
At2g01940.1/Localization_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Biophysical properties[]
The gene model At2g01940.1 has 445 amino-acid residues and a molecular weight Mw = 50.157 kDa.
The protein is relatively basic; at the physiological pH 7.4, its net charge is 17.33, or 0.039 per residue._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Knockout phenotype[]
At2g01940.1/Knockout
Protein interactions[]
At2g01940.1/Interactions_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ This protein does not interact with calmodulin in the presence or absence of calcium or EGTA. NADK3 has been reported to be phosphorylated in vitro by AtMAPK4. NADK3 forms a homodimer.
Domain structure[]
The gene model At2g01940.1 has 2 recognized domains:
- Domain_0073_0095 zf-C2H2 domain (PF00096, IPR007087) Description: Zinc finger, C2H2-type;Molecular Function: nucleic acid binding (GO:0003676), Cellular Component: nucleus (GO:0005634), Molecular Function: zinc ion binding (GO:0008270)
- Domain_0151_0173 zf-C2H2 domain (PF00096, IPR007087) Description: Zinc finger, C2H2-type;Molecular Function: nucleic acid binding (GO:0003676), Cellular Component: nucleus (GO:0005634), Molecular Function: zinc ion binding (GO:0008270)_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3 contains the conserved NAD(H) kinase domain, GSTAAMQSAGG for binding NAD and the upstream GGDGT ATP-binding domain.
Amino-acid sequence[]
>At2g01940.1
MRTDQVMLSN
KNTNTCCVVS
SSSSDPFLSS
SENGVTTTNT
STQKRKRRPA
GTPDPDAEVV
SLSPRTLLES
DRYICEICNQ
GFQRDQNLQM
HRRRHKVPWK
LLKRDNNIEV
KKRVYVCPEP
TCLHHNPCHA
LGDLVGIKKH
FRRKHSNHKQ
WVCERCSKGY
AVQSDYKAHL
KTCGTRGHSC
DCGRVFSRVE
SFIEHQDNCS
ARRVHREPPR
PPQTAVTVPA
CSSRTASTVS
TPSSETNYGG
TVAVTTPQPL
EGRPIHQRIS
SSILTNSSNN
LNLELQLLPL
SSNQNPNQEN
QQQKVKEPSH
HHNHNHDTTN
LNLSIAPSSS
YQHYNNFDRI
KEIMASEQIM
KIAMKEKAYA
EEAKREAKRQ
REIAENEFAN
AKKIRQKAQA
ELERAKFLKE
QSMKKISSTI
MQVTCQTCKG
QFQAVAVPAA
TADETSLVVS
YMSSANTDGE
LENGF
________________Given the above incorrect annotations, this may, or may not, be the correct sequence for At1g57680.1 _________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE
WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ
FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP
CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF
MVREPISPGSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDAP
VLNVFLSHGISQIRSRY-
Multiple sequence alignment[]
A full-length multiple-sequence alignment (MSA) is available here. This MSA may be visualized by submitting it to a server such as ESPript.
Protein structure[]
A predicted structure for this protein is available here.
References[]
- ↑ This is a test reference.