In the plant Arabidopsis thaliana, At1g07570.1 is a gene model for the locus At1g07570.[1]
Also known as APK1, and APK1A, this gene model is classified by TAIR as "APK1A (Arabidopsis protein kinase 1A); kinase". It is located on chr1, region 2331366-2333207 REVERSE.
Physiological function[]
At1g07570.1/Function_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ ______________ ________________ (At1g78590) NADK3 (At1g78590) is a NAD(H) kinase with a strong preference for NADH over NAD+. NAD(H) kinases phosphorylate NAD(H) with ATP (other phosphoryl donors are not used preferentially) to form NADP(H). Phosphorylation of NAD(H) is the sole known means of generating NADP(H) de novo.
Tissue expression[]
At1g07570.1/Expression
Subcellular localization[]
At1g07570.1/Localization_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Biophysical properties[]
The gene model At1g07570.1 has 410 amino-acid residues and a molecular weight Mw = 45.536 kDa.
The protein is relatively basic; at the physiological pH 7.4, its net charge is 17.66, or 0.043 per residue._____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ NADK3-GFP has been shown by in vivo transient expression to be localized to the cytosol, confirmed by immunoblotting.
Knockout phenotype[]
At1g07570.1/Knockout
Protein interactions[]
At1g07570.1/Interactions_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________ This protein does not interact with calmodulin in the presence or absence of calcium or EGTA. NADK3 has been reported to be phosphorylated in vitro by AtMAPK4. NADK3 forms a homodimer.
Domain structure[]
The gene model At1g07570.1 has 1 recognized domains:
- Domain_0068_0277 Pkinase domain (PF00069, IPR000719) Description: Protein kinase;Molecular Function: protein kinase activity (GO:0004672), Molecular Function: ATP binding (GO:0005524), Biological Process: protein amino acid phosphorylation (GO:0006468)_____________The entry below does not belong to this gene_________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
NADK3 contains the conserved NAD(H) kinase domain, GSTAAMQSAGG for binding NAD and the upstream GGDGT ATP-binding domain.
Amino-acid sequence[]
>At1g07570.1
MGICLSAQVK
AESSGASTKY
DAKDIGSLGS
KASSVSVRPS
PRTEGEILQS
PNLKSFSFAE
LKSATRNFRP
DSVLGEGGFG
CVFKGWIDEK
SLTASRPGTG
LVIAVKKLNQ
DGWQGHQEWL
AEVNYLGQFS
HRHLVKLIGY
CLEDEHRLLV
YEFMPRGSLE
NHLFRRGLYF
QPLSWKLRLK
VALGAAKGLA
FLHSSETRVI
YRDFKTSNIL
LDSEYNAKLS
DFGLAKDGPI
GDKSHVSTRV
MGTHGYAAPE
YLATGHLTTK
SDVYSFGVVL
LELLSGRRAV
DKNRPSGERN
LVEWAKPYLV
NKRKIFRVID
NRLQDQYSME
EACKVATLSL
RCLTTEIKLR
PNMSEVVSHL
EHIQSLNAAI
GGNMDKTDRR
MRRRSDSVVS
KKVNAGFARQ
TAVGSTVVAY
PRPSASPLYV
________________Given the above incorrect annotations, this may, or may not, be the correct sequence for At1g57680.1 _________________ ___________________________ ____________________ ___________ __________ __________________ __________________ _________________ _________________
MAIRKLLLLLKPIDPYPFLQTEGASLIKNPQVLQYLESRCKVHKNAIKFCQEILSKKPVE
WKPISRNDLSHPIRDVDMVITVGGDGTLLHASHFIDDSVPVLGVNSDPTQAHEVEELSDQ
FDASRSTGHLCAATVENFEQVLDDILFGRVVPAKVSRISLKLNSETLLSHALNDILIAQP
CPAAVSRFSFKIKNKDGASSPKTVNCRSSGLRICTAAGSTAAMQSAGGFVMPMLSRDLQF
MVREPISPGSTASLMHSTFKPDQFMDVNWYSDHGTIYIDGCQVQHSVQLGDTIEISSDAP
VLNVFLSHGISQIRSRY-
Multiple sequence alignment[]
A full-length multiple-sequence alignment (MSA) is available here. This MSA may be visualized by submitting it to a server such as ESPript.
Protein structure[]
A predicted structure for this protein is available here.
References[]
- ↑ This is a test reference.